Strain Fitness in Sinorhizobium meliloti 1021 around SMc00268

Experiment: 1-octen-3-ol 0.4933903333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00267 and SMc00268 are separated by 48 nucleotidesSMc00268 and SMc00269 are separated by 74 nucleotides SMc00267: SMc00267 - hypothetical protein, at 1,836,573 to 1,837,397 SMc00267 SMc00268: SMc00268 - oxidoreductase, at 1,837,446 to 1,838,204 SMc00268 SMc00269: SMc00269 - transketolase, at 1,838,279 to 1,839,325 SMc00269 Position (kb) 1837 1838 1839Strain fitness (log2 ratio) -1 0 1at 1836.521 kb on + strandat 1836.574 kb on + strandat 1836.581 kb on + strandat 1836.782 kb on + strand, within SMc00267at 1836.799 kb on + strand, within SMc00267at 1836.820 kb on + strand, within SMc00267at 1837.032 kb on + strand, within SMc00267at 1837.032 kb on + strand, within SMc00267at 1837.033 kb on - strand, within SMc00267at 1837.136 kb on + strand, within SMc00267at 1837.137 kb on - strand, within SMc00267at 1837.138 kb on + strand, within SMc00267at 1837.138 kb on + strand, within SMc00267at 1837.138 kb on + strand, within SMc00267at 1837.138 kb on + strand, within SMc00267at 1837.139 kb on - strand, within SMc00267at 1837.172 kb on + strand, within SMc00267at 1837.172 kb on + strand, within SMc00267at 1837.190 kb on + strand, within SMc00267at 1837.195 kb on + strand, within SMc00267at 1837.196 kb on - strand, within SMc00267at 1837.267 kb on + strand, within SMc00267at 1837.268 kb on - strand, within SMc00267at 1837.357 kb on - strandat 1837.375 kb on + strandat 1837.376 kb on - strandat 1837.496 kb on - strandat 1837.496 kb on - strandat 1837.496 kb on - strandat 1837.496 kb on - strandat 1837.749 kb on + strand, within SMc00268at 1837.750 kb on - strand, within SMc00268at 1837.751 kb on + strand, within SMc00268at 1837.752 kb on - strand, within SMc00268at 1837.843 kb on + strand, within SMc00268at 1837.843 kb on + strand, within SMc00268at 1837.844 kb on - strand, within SMc00268at 1837.882 kb on + strand, within SMc00268at 1837.883 kb on - strand, within SMc00268at 1837.883 kb on - strand, within SMc00268at 1838.015 kb on + strand, within SMc00268at 1838.015 kb on + strand, within SMc00268at 1838.015 kb on + strand, within SMc00268at 1838.015 kb on + strand, within SMc00268at 1838.015 kb on + strand, within SMc00268at 1838.016 kb on - strand, within SMc00268at 1838.016 kb on - strand, within SMc00268at 1838.190 kb on + strandat 1838.259 kb on + strandat 1838.570 kb on - strand, within SMc00269at 1838.688 kb on + strand, within SMc00269at 1838.689 kb on - strand, within SMc00269at 1838.743 kb on + strand, within SMc00269at 1838.744 kb on - strand, within SMc00269at 1838.745 kb on + strand, within SMc00269at 1838.745 kb on + strand, within SMc00269at 1838.745 kb on + strand, within SMc00269at 1838.746 kb on - strand, within SMc00269at 1838.851 kb on + strand, within SMc00269at 1838.928 kb on + strand, within SMc00269at 1838.928 kb on + strand, within SMc00269at 1838.929 kb on - strand, within SMc00269at 1838.929 kb on - strand, within SMc00269at 1838.929 kb on - strand, within SMc00269at 1838.961 kb on + strand, within SMc00269at 1838.961 kb on + strand, within SMc00269at 1838.961 kb on + strand, within SMc00269at 1838.988 kb on + strandat 1838.988 kb on + strand, within SMc00269at 1838.988 kb on + strand, within SMc00269at 1838.989 kb on - strand, within SMc00269at 1838.989 kb on - strand, within SMc00269at 1838.989 kb on - strand, within SMc00269at 1838.989 kb on - strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.047 kb on + strand, within SMc00269at 1839.118 kb on - strand, within SMc00269at 1839.118 kb on - strand, within SMc00269

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.4933903333 mM
remove
1,836,521 + +0.4
1,836,574 + -0.9
1,836,581 + +0.2
1,836,782 + SMc00267 0.25 -0.1
1,836,799 + SMc00267 0.27 +0.0
1,836,820 + SMc00267 0.30 -0.7
1,837,032 + SMc00267 0.56 -0.1
1,837,032 + SMc00267 0.56 -0.4
1,837,033 - SMc00267 0.56 -0.1
1,837,136 + SMc00267 0.68 -0.2
1,837,137 - SMc00267 0.68 +1.1
1,837,138 + SMc00267 0.68 -0.5
1,837,138 + SMc00267 0.68 +0.6
1,837,138 + SMc00267 0.68 +0.5
1,837,138 + SMc00267 0.68 -0.1
1,837,139 - SMc00267 0.69 +0.3
1,837,172 + SMc00267 0.73 +1.6
1,837,172 + SMc00267 0.73 +0.3
1,837,190 + SMc00267 0.75 -0.8
1,837,195 + SMc00267 0.75 +0.1
1,837,196 - SMc00267 0.76 -0.6
1,837,267 + SMc00267 0.84 +0.1
1,837,268 - SMc00267 0.84 -0.9
1,837,357 - -0.2
1,837,375 + +0.0
1,837,376 - +0.3
1,837,496 - -0.8
1,837,496 - +0.2
1,837,496 - -0.2
1,837,496 - +0.1
1,837,749 + SMc00268 0.40 -0.1
1,837,750 - SMc00268 0.40 +0.7
1,837,751 + SMc00268 0.40 -0.5
1,837,752 - SMc00268 0.40 -0.2
1,837,843 + SMc00268 0.52 +0.4
1,837,843 + SMc00268 0.52 +0.4
1,837,844 - SMc00268 0.52 +0.4
1,837,882 + SMc00268 0.57 +0.5
1,837,883 - SMc00268 0.58 +0.4
1,837,883 - SMc00268 0.58 +1.1
1,838,015 + SMc00268 0.75 +0.2
1,838,015 + SMc00268 0.75 -0.2
1,838,015 + SMc00268 0.75 -0.3
1,838,015 + SMc00268 0.75 +0.8
1,838,015 + SMc00268 0.75 -0.2
1,838,016 - SMc00268 0.75 +0.6
1,838,016 - SMc00268 0.75 -0.0
1,838,190 + -1.6
1,838,259 + -0.1
1,838,570 - SMc00269 0.28 -0.2
1,838,688 + SMc00269 0.39 -0.0
1,838,689 - SMc00269 0.39 +1.7
1,838,743 + SMc00269 0.44 -0.8
1,838,744 - SMc00269 0.44 -0.4
1,838,745 + SMc00269 0.45 +0.8
1,838,745 + SMc00269 0.45 -0.5
1,838,745 + SMc00269 0.45 -0.2
1,838,746 - SMc00269 0.45 +0.0
1,838,851 + SMc00269 0.55 -0.8
1,838,928 + SMc00269 0.62 +0.3
1,838,928 + SMc00269 0.62 -1.3
1,838,929 - SMc00269 0.62 +0.8
1,838,929 - SMc00269 0.62 +0.2
1,838,929 - SMc00269 0.62 -0.2
1,838,961 + SMc00269 0.65 +0.2
1,838,961 + SMc00269 0.65 +0.6
1,838,961 + SMc00269 0.65 -0.1
1,838,988 + -0.8
1,838,988 + SMc00269 0.68 +0.1
1,838,988 + SMc00269 0.68 -0.8
1,838,989 - SMc00269 0.68 +1.2
1,838,989 - SMc00269 0.68 -0.8
1,838,989 - SMc00269 0.68 +0.1
1,838,989 - SMc00269 0.68 -0.1
1,839,047 + SMc00269 0.73 +0.7
1,839,047 + SMc00269 0.73 +0.1
1,839,047 + SMc00269 0.73 -0.3
1,839,047 + SMc00269 0.73 -1.3
1,839,047 + SMc00269 0.73 -0.2
1,839,047 + SMc00269 0.73 +0.5
1,839,118 - SMc00269 0.80 -0.7
1,839,118 - SMc00269 0.80 +0.2

Or see this region's nucleotide sequence