Strain Fitness in Sinorhizobium meliloti 1021 around SMc00185

Experiment: 1-octen-3-ol 0.4933903333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00186 and SMc00185 are separated by 59 nucleotidesSMc00185 and SMc00184 are separated by 474 nucleotidesSMc00184 and SMc00183 are separated by 52 nucleotides SMc00186: SMc00186 - ABC transporter ATP-binding protein, at 1,975,896 to 1,977,818 SMc00186 SMc00185: SMc00185 - ABC transporter ATP-binding protein, at 1,977,878 to 1,979,731 SMc00185 SMc00184: SMc00184 - tRNA/rRNA methyltransferase, at 1,980,206 to 1,980,667 SMc00184 SMc00183: SMc00183 - hypothetical protein, at 1,980,720 to 1,981,292 SMc00183 Position (kb) 1977 1978 1979 1980Strain fitness (log2 ratio) -2 -1 0 1 2at 1977.002 kb on - strand, within SMc00186at 1977.137 kb on - strand, within SMc00186at 1977.232 kb on + strand, within SMc00186at 1977.233 kb on - strand, within SMc00186at 1977.233 kb on - strand, within SMc00186at 1977.373 kb on + strand, within SMc00186at 1977.373 kb on + strand, within SMc00186at 1977.373 kb on + strand, within SMc00186at 1977.373 kb on + strand, within SMc00186at 1977.373 kb on + strand, within SMc00186at 1977.373 kb on + strand, within SMc00186at 1977.373 kb on + strand, within SMc00186at 1977.374 kb on - strand, within SMc00186at 1977.374 kb on - strand, within SMc00186at 1977.374 kb on - strand, within SMc00186at 1977.374 kb on - strand, within SMc00186at 1977.474 kb on - strand, within SMc00186at 1977.474 kb on - strand, within SMc00186at 1977.546 kb on - strand, within SMc00186at 1977.546 kb on - strand, within SMc00186at 1977.578 kb on - strand, within SMc00186at 1977.578 kb on - strand, within SMc00186at 1977.659 kb on - strandat 1977.772 kb on + strandat 1977.819 kb on + strandat 1977.819 kb on + strandat 1977.820 kb on - strandat 1977.830 kb on - strandat 1977.879 kb on + strandat 1977.879 kb on + strandat 1977.951 kb on + strandat 1977.951 kb on + strandat 1977.952 kb on - strandat 1977.952 kb on - strandat 1978.362 kb on + strand, within SMc00185at 1978.363 kb on - strand, within SMc00185at 1978.500 kb on + strand, within SMc00185at 1978.500 kb on + strand, within SMc00185at 1978.601 kb on + strand, within SMc00185at 1978.601 kb on + strand, within SMc00185at 1978.602 kb on - strand, within SMc00185at 1978.623 kb on + strand, within SMc00185at 1978.734 kb on + strand, within SMc00185at 1978.734 kb on + strand, within SMc00185at 1978.735 kb on - strand, within SMc00185at 1978.866 kb on + strand, within SMc00185at 1978.866 kb on + strand, within SMc00185at 1978.866 kb on + strand, within SMc00185at 1978.867 kb on - strand, within SMc00185at 1978.900 kb on + strand, within SMc00185at 1978.901 kb on - strand, within SMc00185at 1978.914 kb on + strand, within SMc00185at 1978.915 kb on - strand, within SMc00185at 1978.922 kb on + strand, within SMc00185at 1978.922 kb on + strand, within SMc00185at 1978.922 kb on + strand, within SMc00185at 1978.922 kb on + strand, within SMc00185at 1978.995 kb on + strand, within SMc00185at 1978.996 kb on - strand, within SMc00185at 1978.996 kb on - strand, within SMc00185at 1979.039 kb on + strand, within SMc00185at 1979.039 kb on + strand, within SMc00185at 1979.039 kb on + strand, within SMc00185at 1979.040 kb on - strand, within SMc00185at 1979.040 kb on - strand, within SMc00185at 1979.049 kb on + strand, within SMc00185at 1979.049 kb on + strand, within SMc00185at 1979.050 kb on - strand, within SMc00185at 1979.146 kb on + strand, within SMc00185at 1979.147 kb on - strand, within SMc00185at 1979.148 kb on + strand, within SMc00185at 1979.148 kb on + strand, within SMc00185at 1979.148 kb on + strand, within SMc00185at 1979.148 kb on + strand, within SMc00185at 1979.148 kb on + strand, within SMc00185at 1979.149 kb on - strand, within SMc00185at 1979.149 kb on - strand, within SMc00185at 1979.149 kb on - strand, within SMc00185at 1979.227 kb on - strand, within SMc00185at 1979.227 kb on - strand, within SMc00185at 1979.238 kb on + strand, within SMc00185at 1979.239 kb on - strand, within SMc00185at 1979.361 kb on + strand, within SMc00185at 1979.395 kb on - strand, within SMc00185at 1979.640 kb on + strandat 1979.641 kb on - strandat 1979.641 kb on - strandat 1979.641 kb on - strandat 1979.783 kb on + strandat 1980.079 kb on + strandat 1980.159 kb on + strandat 1980.362 kb on + strand, within SMc00184at 1980.362 kb on + strand, within SMc00184at 1980.362 kb on + strand, within SMc00184at 1980.363 kb on - strand, within SMc00184at 1980.363 kb on - strand, within SMc00184

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.4933903333 mM
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1,977,002 - SMc00186 0.58 -0.0
1,977,137 - SMc00186 0.65 +1.5
1,977,232 + SMc00186 0.69 -0.7
1,977,233 - SMc00186 0.70 +0.4
1,977,233 - SMc00186 0.70 -0.5
1,977,373 + SMc00186 0.77 +0.4
1,977,373 + SMc00186 0.77 +1.4
1,977,373 + SMc00186 0.77 +1.3
1,977,373 + SMc00186 0.77 +0.0
1,977,373 + SMc00186 0.77 -0.4
1,977,373 + SMc00186 0.77 -0.7
1,977,373 + SMc00186 0.77 +0.1
1,977,374 - SMc00186 0.77 -0.1
1,977,374 - SMc00186 0.77 -0.5
1,977,374 - SMc00186 0.77 +0.0
1,977,374 - SMc00186 0.77 -0.5
1,977,474 - SMc00186 0.82 +2.0
1,977,474 - SMc00186 0.82 +0.2
1,977,546 - SMc00186 0.86 +0.1
1,977,546 - SMc00186 0.86 +0.0
1,977,578 - SMc00186 0.87 -0.3
1,977,578 - SMc00186 0.87 +1.2
1,977,659 - -0.1
1,977,772 + -0.4
1,977,819 + +0.1
1,977,819 + +1.0
1,977,820 - +0.6
1,977,830 - -0.0
1,977,879 + -0.4
1,977,879 + -0.5
1,977,951 + -0.2
1,977,951 + -0.5
1,977,952 - -0.6
1,977,952 - -0.2
1,978,362 + SMc00185 0.26 -0.3
1,978,363 - SMc00185 0.26 -0.1
1,978,500 + SMc00185 0.34 -0.0
1,978,500 + SMc00185 0.34 +0.0
1,978,601 + SMc00185 0.39 -0.9
1,978,601 + SMc00185 0.39 -0.9
1,978,602 - SMc00185 0.39 -1.1
1,978,623 + SMc00185 0.40 +0.4
1,978,734 + SMc00185 0.46 -1.2
1,978,734 + SMc00185 0.46 +0.7
1,978,735 - SMc00185 0.46 +0.0
1,978,866 + SMc00185 0.53 +0.7
1,978,866 + SMc00185 0.53 -0.9
1,978,866 + SMc00185 0.53 +0.2
1,978,867 - SMc00185 0.53 -0.2
1,978,900 + SMc00185 0.55 -0.4
1,978,901 - SMc00185 0.55 +0.2
1,978,914 + SMc00185 0.56 -1.1
1,978,915 - SMc00185 0.56 -0.3
1,978,922 + SMc00185 0.56 -0.4
1,978,922 + SMc00185 0.56 -1.0
1,978,922 + SMc00185 0.56 +0.2
1,978,922 + SMc00185 0.56 +0.9
1,978,995 + SMc00185 0.60 +0.2
1,978,996 - SMc00185 0.60 -0.8
1,978,996 - SMc00185 0.60 -1.4
1,979,039 + SMc00185 0.63 -0.3
1,979,039 + SMc00185 0.63 -1.2
1,979,039 + SMc00185 0.63 -0.5
1,979,040 - SMc00185 0.63 -0.3
1,979,040 - SMc00185 0.63 -0.8
1,979,049 + SMc00185 0.63 +0.8
1,979,049 + SMc00185 0.63 +0.8
1,979,050 - SMc00185 0.63 +1.6
1,979,146 + SMc00185 0.68 +0.6
1,979,147 - SMc00185 0.68 -0.1
1,979,148 + SMc00185 0.69 -0.6
1,979,148 + SMc00185 0.69 -1.6
1,979,148 + SMc00185 0.69 +0.0
1,979,148 + SMc00185 0.69 -0.8
1,979,148 + SMc00185 0.69 -0.6
1,979,149 - SMc00185 0.69 +0.8
1,979,149 - SMc00185 0.69 -0.8
1,979,149 - SMc00185 0.69 -0.1
1,979,227 - SMc00185 0.73 +1.5
1,979,227 - SMc00185 0.73 +0.6
1,979,238 + SMc00185 0.73 +0.3
1,979,239 - SMc00185 0.73 +0.3
1,979,361 + SMc00185 0.80 -0.6
1,979,395 - SMc00185 0.82 -1.4
1,979,640 + -0.5
1,979,641 - -0.7
1,979,641 - +0.6
1,979,641 - -0.2
1,979,783 + -2.2
1,980,079 + +0.2
1,980,159 + -0.8
1,980,362 + SMc00184 0.34 +0.0
1,980,362 + SMc00184 0.34 -0.8
1,980,362 + SMc00184 0.34 +0.8
1,980,363 - SMc00184 0.34 +0.2
1,980,363 - SMc00184 0.34 -0.8

Or see this region's nucleotide sequence