Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21489

Experiment: 1-octen-3-ol 0.4933903333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21488 and SM_b21489 overlap by 4 nucleotidesSM_b21489 and SM_b22024 overlap by 4 nucleotidesSM_b22024 and SM_b21490 are separated by 135 nucleotides SM_b21488: SM_b21488 - cytochrome o ubiquinol oxidase subunit I, at 1,409,489 to 1,411,498 _b21488 SM_b21489: SM_b21489 - cytochrome O ubiquinol oxidase subunit III, at 1,411,495 to 1,412,127 _b21489 SM_b22024: SM_b22024 - cytochrome O ubiquinol oxidase CyoD, at 1,412,124 to 1,412,525 _b22024 SM_b21490: SM_b21490 - hypothetical protein, at 1,412,661 to 1,413,416 _b21490 Position (kb) 1411 1412 1413Strain fitness (log2 ratio) -1 0 1 2at 1410.629 kb on + strand, within SM_b21488at 1410.630 kb on - strand, within SM_b21488at 1410.658 kb on + strand, within SM_b21488at 1410.658 kb on + strand, within SM_b21488at 1410.658 kb on + strand, within SM_b21488at 1410.911 kb on + strand, within SM_b21488at 1410.911 kb on + strand, within SM_b21488at 1411.166 kb on + strand, within SM_b21488at 1411.216 kb on + strand, within SM_b21488at 1411.256 kb on - strand, within SM_b21488at 1411.256 kb on - strand, within SM_b21488at 1411.256 kb on - strand, within SM_b21488at 1411.341 kb on - strandat 1411.410 kb on - strandat 1411.550 kb on - strandat 1411.603 kb on + strand, within SM_b21489at 1411.603 kb on + strand, within SM_b21489at 1411.604 kb on - strand, within SM_b21489at 1411.669 kb on + strand, within SM_b21489at 1411.787 kb on - strand, within SM_b21489at 1412.105 kb on - strandat 1412.566 kb on + strandat 1412.567 kb on - strandat 1412.632 kb on + strandat 1412.946 kb on + strand, within SM_b21490

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.4933903333 mM
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1,410,629 + SM_b21488 0.57 -0.9
1,410,630 - SM_b21488 0.57 +0.2
1,410,658 + SM_b21488 0.58 -0.4
1,410,658 + SM_b21488 0.58 -0.1
1,410,658 + SM_b21488 0.58 -0.0
1,410,911 + SM_b21488 0.71 -0.0
1,410,911 + SM_b21488 0.71 -1.5
1,411,166 + SM_b21488 0.83 -0.1
1,411,216 + SM_b21488 0.86 -0.2
1,411,256 - SM_b21488 0.88 +1.2
1,411,256 - SM_b21488 0.88 +0.9
1,411,256 - SM_b21488 0.88 -0.4
1,411,341 - +0.6
1,411,410 - +0.4
1,411,550 - +0.4
1,411,603 + SM_b21489 0.17 +1.1
1,411,603 + SM_b21489 0.17 -0.3
1,411,604 - SM_b21489 0.17 +1.9
1,411,669 + SM_b21489 0.27 +0.2
1,411,787 - SM_b21489 0.46 +1.8
1,412,105 - +0.7
1,412,566 + +0.8
1,412,567 - +0.2
1,412,632 + -1.0
1,412,946 + SM_b21490 0.38 -0.4

Or see this region's nucleotide sequence