Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20462

Experiment: 1-octen-3-ol 0.4933903333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20460 and SM_b20461 are separated by 10 nucleotidesSM_b20461 and SM_b20462 overlap by 4 nucleotidesSM_b20462 and SM_b20463 overlap by 1 nucleotidesSM_b20463 and SM_b20464 are separated by 188 nucleotides SM_b20460: SM_b20460 - cellulose synthase, at 472,441 to 474,306 _b20460 SM_b20461: SM_b20461 - hypothetical protein, at 474,317 to 474,925 _b20461 SM_b20462: SM_b20462 - cellulase H protein, at 474,922 to 475,899 _b20462 SM_b20463: SM_b20463 - hypothetical protein, at 475,899 to 476,408 _b20463 SM_b20464: SM_b20464 - hypothetical protein, at 476,597 to 476,899 _b20464 Position (kb) 474 475 476Strain fitness (log2 ratio) -2 -1 0 1 2at 473.959 kb on + strand, within SM_b20460at 473.959 kb on + strand, within SM_b20460at 473.959 kb on + strand, within SM_b20460at 473.959 kb on + strand, within SM_b20460at 473.960 kb on - strand, within SM_b20460at 473.960 kb on - strand, within SM_b20460at 474.193 kb on + strandat 474.193 kb on + strandat 474.194 kb on - strandat 474.240 kb on - strandat 474.294 kb on - strandat 474.305 kb on - strandat 474.305 kb on - strandat 474.305 kb on - strandat 474.305 kb on - strandat 474.485 kb on + strand, within SM_b20461at 474.485 kb on + strand, within SM_b20461at 474.485 kb on + strand, within SM_b20461at 474.486 kb on - strand, within SM_b20461at 474.486 kb on - strand, within SM_b20461at 474.486 kb on - strand, within SM_b20461at 474.486 kb on - strand, within SM_b20461at 474.720 kb on - strand, within SM_b20461at 474.720 kb on - strand, within SM_b20461at 474.749 kb on + strand, within SM_b20461at 474.750 kb on - strand, within SM_b20461at 474.877 kb on + strandat 474.877 kb on + strandat 474.946 kb on - strandat 475.093 kb on + strand, within SM_b20462at 475.198 kb on + strand, within SM_b20462at 475.199 kb on - strand, within SM_b20462at 475.589 kb on - strand, within SM_b20462at 475.723 kb on + strand, within SM_b20462at 475.723 kb on + strand, within SM_b20462at 475.723 kb on + strand, within SM_b20462at 475.724 kb on - strand, within SM_b20462at 475.724 kb on - strand, within SM_b20462at 475.724 kb on - strand, within SM_b20462at 475.724 kb on - strand, within SM_b20462at 475.724 kb on - strand, within SM_b20462at 475.724 kb on - strand, within SM_b20462at 475.813 kb on + strandat 475.863 kb on + strandat 475.911 kb on + strandat 475.911 kb on + strandat 475.912 kb on - strandat 475.921 kb on + strandat 475.921 kb on + strandat 475.952 kb on - strand, within SM_b20463at 476.029 kb on - strand, within SM_b20463at 476.037 kb on + strand, within SM_b20463at 476.136 kb on + strand, within SM_b20463at 476.176 kb on + strand, within SM_b20463at 476.176 kb on + strand, within SM_b20463at 476.176 kb on + strand, within SM_b20463at 476.263 kb on - strand, within SM_b20463at 476.292 kb on + strand, within SM_b20463at 476.293 kb on - strand, within SM_b20463at 476.293 kb on - strand, within SM_b20463at 476.355 kb on + strand, within SM_b20463at 476.355 kb on + strand, within SM_b20463at 476.355 kb on + strand, within SM_b20463at 476.356 kb on - strand, within SM_b20463at 476.356 kb on - strand, within SM_b20463at 476.356 kb on - strand, within SM_b20463at 476.509 kb on + strandat 476.510 kb on - strandat 476.510 kb on - strandat 476.510 kb on - strandat 476.598 kb on + strandat 476.599 kb on - strandat 476.648 kb on - strand, within SM_b20464at 476.649 kb on + strand, within SM_b20464at 476.650 kb on - strand, within SM_b20464at 476.650 kb on - strand, within SM_b20464at 476.650 kb on - strand, within SM_b20464at 476.650 kb on - strand, within SM_b20464at 476.650 kb on - strand, within SM_b20464

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.4933903333 mM
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473,959 + SM_b20460 0.81 +0.2
473,959 + SM_b20460 0.81 +0.9
473,959 + SM_b20460 0.81 -0.1
473,959 + SM_b20460 0.81 -0.1
473,960 - SM_b20460 0.81 -0.1
473,960 - SM_b20460 0.81 +0.4
474,193 + +0.1
474,193 + -0.1
474,194 - -0.2
474,240 - +0.5
474,294 - -0.2
474,305 - +0.4
474,305 - -0.3
474,305 - -1.1
474,305 - -1.4
474,485 + SM_b20461 0.28 -2.2
474,485 + SM_b20461 0.28 +1.2
474,485 + SM_b20461 0.28 +0.4
474,486 - SM_b20461 0.28 -0.6
474,486 - SM_b20461 0.28 +0.2
474,486 - SM_b20461 0.28 -0.2
474,486 - SM_b20461 0.28 -0.3
474,720 - SM_b20461 0.66 +0.2
474,720 - SM_b20461 0.66 +0.3
474,749 + SM_b20461 0.71 -0.1
474,750 - SM_b20461 0.71 -0.3
474,877 + -0.2
474,877 + +0.1
474,946 - -1.4
475,093 + SM_b20462 0.17 -0.4
475,198 + SM_b20462 0.28 -0.4
475,199 - SM_b20462 0.28 -0.9
475,589 - SM_b20462 0.68 -0.3
475,723 + SM_b20462 0.82 -0.8
475,723 + SM_b20462 0.82 -0.5
475,723 + SM_b20462 0.82 -0.9
475,724 - SM_b20462 0.82 +0.1
475,724 - SM_b20462 0.82 -0.9
475,724 - SM_b20462 0.82 -0.6
475,724 - SM_b20462 0.82 -0.2
475,724 - SM_b20462 0.82 -0.2
475,724 - SM_b20462 0.82 +0.0
475,813 + +0.0
475,863 + +0.1
475,911 + -0.1
475,911 + +0.5
475,912 - -0.4
475,921 + -0.1
475,921 + +0.5
475,952 - SM_b20463 0.10 -1.2
476,029 - SM_b20463 0.25 -0.1
476,037 + SM_b20463 0.27 -0.1
476,136 + SM_b20463 0.46 +0.5
476,176 + SM_b20463 0.54 +2.4
476,176 + SM_b20463 0.54 +0.8
476,176 + SM_b20463 0.54 +0.0
476,263 - SM_b20463 0.71 +0.1
476,292 + SM_b20463 0.77 +1.3
476,293 - SM_b20463 0.77 +0.4
476,293 - SM_b20463 0.77 -0.3
476,355 + SM_b20463 0.89 -0.1
476,355 + SM_b20463 0.89 +0.9
476,355 + SM_b20463 0.89 -0.5
476,356 - SM_b20463 0.90 +0.8
476,356 - SM_b20463 0.90 -0.3
476,356 - SM_b20463 0.90 -0.6
476,509 + -0.1
476,510 - -1.2
476,510 - -2.2
476,510 - -0.1
476,598 + -1.0
476,599 - +0.3
476,648 - SM_b20464 0.17 -0.8
476,649 + SM_b20464 0.17 +0.4
476,650 - SM_b20464 0.17 -0.4
476,650 - SM_b20464 0.17 -0.4
476,650 - SM_b20464 0.17 -0.9
476,650 - SM_b20464 0.17 +0.0
476,650 - SM_b20464 0.17 +0.1

Or see this region's nucleotide sequence