Experiment: 1-octen-3-ol 0.4933903333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00129 and SMc00067 are separated by 211 nucleotides SMc00067 and SMc02361 are separated by 174 nucleotides SMc02361 and SMc02362 overlap by 4 nucleotides SMc02362 and SMc02363 overlap by 4 nucleotides
SMc00129: SMc00129 - sensor histidine kinase, at 1,105,638 to 1,107,023
SMc00129
SMc00067: SMc00067 - outer-membranne lipoprotein, at 1,107,235 to 1,107,645
SMc00067
SMc02361: SMc02361 - cytochrome C-type biogenesis transmembrane protein, at 1,107,820 to 1,108,965
SMc02361
SMc02362: SMc02362 - cytochrome c-type biogenesis protein CcmE, at 1,108,962 to 1,109,414
SMc02362
SMc02363: SMc02363 - cytochrome C-type biogenesis transmembrane protein, at 1,109,411 to 1,111,441
SMc02363
Position (kb)
1107
1108
1109 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1106.926 kb on + strand at 1106.946 kb on + strand at 1106.947 kb on - strand at 1106.947 kb on - strand at 1106.947 kb on - strand at 1106.947 kb on - strand at 1107.005 kb on - strand at 1107.021 kb on + strand at 1107.022 kb on - strand at 1107.177 kb on + strand at 1107.177 kb on + strand at 1107.177 kb on + strand at 1107.178 kb on - strand at 1107.178 kb on - strand at 1107.190 kb on + strand at 1107.251 kb on + strand at 1107.251 kb on + strand at 1107.252 kb on - strand at 1107.346 kb on + strand, within SMc00067 at 1107.346 kb on + strand, within SMc00067 at 1107.347 kb on - strand, within SMc00067 at 1107.347 kb on - strand, within SMc00067 at 1107.347 kb on - strand, within SMc00067 at 1107.437 kb on - strand, within SMc00067 at 1107.554 kb on - strand, within SMc00067 at 1107.554 kb on - strand, within SMc00067 at 1107.562 kb on - strand, within SMc00067 at 1107.664 kb on - strand at 1107.677 kb on + strand at 1107.677 kb on + strand at 1107.677 kb on + strand at 1107.677 kb on + strand at 1107.763 kb on + strand at 1107.805 kb on + strand at 1107.918 kb on + strand at 1108.309 kb on + strand, within SMc02361 at 1108.310 kb on - strand, within SMc02361 at 1108.349 kb on - strand, within SMc02361 at 1108.400 kb on - strand, within SMc02361 at 1108.438 kb on - strand, within SMc02361 at 1108.438 kb on - strand, within SMc02361 at 1108.692 kb on + strand, within SMc02361 at 1108.693 kb on - strand, within SMc02361 at 1108.822 kb on + strand, within SMc02361 at 1108.822 kb on + strand, within SMc02361 at 1108.822 kb on + strand, within SMc02361 at 1109.070 kb on + strand, within SMc02362 at 1109.220 kb on + strand, within SMc02362 at 1109.340 kb on + strand, within SMc02362 at 1109.340 kb on + strand, within SMc02362
Per-strain Table
Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.4933903333 mM remove 1,106,926 + -0.2 1,106,946 + -0.3 1,106,947 - +0.9 1,106,947 - -0.9 1,106,947 - -0.6 1,106,947 - -1.9 1,107,005 - -0.4 1,107,021 + -0.1 1,107,022 - +0.4 1,107,177 + -0.1 1,107,177 + -1.2 1,107,177 + -0.1 1,107,178 - -0.3 1,107,178 - +1.9 1,107,190 + +0.5 1,107,251 + -0.0 1,107,251 + -0.6 1,107,252 - +1.9 1,107,346 + SMc00067 0.27 +0.4 1,107,346 + SMc00067 0.27 -0.7 1,107,347 - SMc00067 0.27 +0.9 1,107,347 - SMc00067 0.27 -0.2 1,107,347 - SMc00067 0.27 +0.6 1,107,437 - SMc00067 0.49 +1.4 1,107,554 - SMc00067 0.78 +0.4 1,107,554 - SMc00067 0.78 +0.9 1,107,562 - SMc00067 0.80 +0.2 1,107,664 - -0.2 1,107,677 + -0.1 1,107,677 + +0.4 1,107,677 + -0.1 1,107,677 + +0.5 1,107,763 + +0.2 1,107,805 + +0.5 1,107,918 + +1.9 1,108,309 + SMc02361 0.43 +0.4 1,108,310 - SMc02361 0.43 +0.9 1,108,349 - SMc02361 0.46 +0.4 1,108,400 - SMc02361 0.51 -0.4 1,108,438 - SMc02361 0.54 +0.4 1,108,438 - SMc02361 0.54 -2.5 1,108,692 + SMc02361 0.76 -0.5 1,108,693 - SMc02361 0.76 -0.1 1,108,822 + SMc02361 0.87 -0.1 1,108,822 + SMc02361 0.87 -1.0 1,108,822 + SMc02361 0.87 -1.2 1,109,070 + SMc02362 0.24 +0.4 1,109,220 + SMc02362 0.57 +1.4 1,109,340 + SMc02362 0.83 -0.2 1,109,340 + SMc02362 0.83 -1.6
Or see this region's nucleotide sequence