Strain Fitness in Sinorhizobium meliloti 1021 around SMc00956

Experiment: 1-octen-3-ol 0.4933903333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00955 and SMc00959 are separated by 485 nucleotidesSMc00959 and SMc00956 are separated by 3 nucleotidesSMc00956 and SMc00958 overlap by 4 nucleotidesSMc00958 and SMc04450 are separated by 399 nucleotides SMc00955: SMc00955 - hypothetical protein, at 1,784,287 to 1,785,462 SMc00955 SMc00959: SMc00959 - hypothetical protein, at 1,785,948 to 1,786,124 SMc00959 SMc00956: SMc00956 - exodeoxyribonuclease III protein, at 1,786,128 to 1,786,922 SMc00956 SMc00958: SMc00958 - hypothetical protein, at 1,786,919 to 1,787,137 SMc00958 SMc04450: SMc04450 - transcription-repair coupling factor, at 1,787,537 to 1,791,052 SMc04450 Position (kb) 1786 1787Strain fitness (log2 ratio) -2 -1 0 1 2at 1785.134 kb on - strand, within SMc00955at 1785.340 kb on - strand, within SMc00955at 1785.412 kb on + strandat 1785.594 kb on - strandat 1785.598 kb on + strandat 1785.598 kb on + strandat 1785.638 kb on - strandat 1785.668 kb on + strandat 1785.668 kb on + strandat 1785.668 kb on + strandat 1785.669 kb on - strandat 1785.689 kb on + strandat 1785.690 kb on - strandat 1785.798 kb on + strandat 1785.798 kb on + strandat 1785.799 kb on - strandat 1785.799 kb on - strandat 1785.801 kb on + strandat 1785.802 kb on - strandat 1785.802 kb on - strandat 1785.893 kb on + strandat 1785.894 kb on - strandat 1785.990 kb on + strand, within SMc00959at 1785.991 kb on - strand, within SMc00959at 1786.143 kb on + strandat 1786.143 kb on + strandat 1786.144 kb on - strandat 1786.395 kb on - strand, within SMc00956at 1786.402 kb on - strand, within SMc00956at 1786.404 kb on - strand, within SMc00956at 1786.443 kb on + strand, within SMc00956at 1786.484 kb on - strand, within SMc00956at 1786.485 kb on + strand, within SMc00956at 1786.485 kb on + strand, within SMc00956at 1786.486 kb on - strand, within SMc00956at 1786.569 kb on + strand, within SMc00956at 1786.570 kb on - strand, within SMc00956at 1786.570 kb on - strand, within SMc00956at 1786.570 kb on - strand, within SMc00956at 1786.656 kb on + strand, within SMc00956at 1786.656 kb on + strand, within SMc00956at 1786.656 kb on + strand, within SMc00956at 1786.737 kb on + strand, within SMc00956at 1786.738 kb on - strand, within SMc00956at 1786.738 kb on - strand, within SMc00956at 1786.738 kb on - strand, within SMc00956at 1786.738 kb on - strand, within SMc00956at 1787.012 kb on + strand, within SMc00958at 1787.135 kb on + strandat 1787.193 kb on + strandat 1787.194 kb on - strandat 1787.322 kb on - strandat 1787.533 kb on + strandat 1787.533 kb on + strandat 1787.533 kb on + strandat 1787.533 kb on + strandat 1787.534 kb on - strandat 1787.534 kb on - strandat 1787.534 kb on - strandat 1787.908 kb on - strand, within SMc04450

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.4933903333 mM
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1,785,134 - SMc00955 0.72 -0.4
1,785,340 - SMc00955 0.90 +0.5
1,785,412 + -0.3
1,785,594 - +0.1
1,785,598 + -0.1
1,785,598 + +0.0
1,785,638 - -1.8
1,785,668 + +0.0
1,785,668 + -0.4
1,785,668 + -0.4
1,785,669 - +0.8
1,785,689 + -0.8
1,785,690 - -0.1
1,785,798 + +0.2
1,785,798 + +1.1
1,785,799 - -0.1
1,785,799 - -0.7
1,785,801 + -0.2
1,785,802 - +0.5
1,785,802 - +0.9
1,785,893 + -0.3
1,785,894 - -0.4
1,785,990 + SMc00959 0.24 +0.3
1,785,991 - SMc00959 0.24 +0.7
1,786,143 + +0.1
1,786,143 + -0.1
1,786,144 - +1.7
1,786,395 - SMc00956 0.34 -0.3
1,786,402 - SMc00956 0.34 +0.4
1,786,404 - SMc00956 0.35 -0.1
1,786,443 + SMc00956 0.40 -0.6
1,786,484 - SMc00956 0.45 +1.9
1,786,485 + SMc00956 0.45 -0.7
1,786,485 + SMc00956 0.45 +0.1
1,786,486 - SMc00956 0.45 +1.4
1,786,569 + SMc00956 0.55 +0.2
1,786,570 - SMc00956 0.56 -0.2
1,786,570 - SMc00956 0.56 -1.1
1,786,570 - SMc00956 0.56 -0.5
1,786,656 + SMc00956 0.66 -0.7
1,786,656 + SMc00956 0.66 -1.3
1,786,656 + SMc00956 0.66 +1.9
1,786,737 + SMc00956 0.77 -0.0
1,786,738 - SMc00956 0.77 +0.5
1,786,738 - SMc00956 0.77 -0.9
1,786,738 - SMc00956 0.77 -0.9
1,786,738 - SMc00956 0.77 -0.2
1,787,012 + SMc00958 0.42 +0.8
1,787,135 + -0.3
1,787,193 + -0.7
1,787,194 - -0.2
1,787,322 - -0.1
1,787,533 + -0.9
1,787,533 + -1.7
1,787,533 + -1.1
1,787,533 + -0.8
1,787,534 - +0.4
1,787,534 - -0.4
1,787,534 - +0.2
1,787,908 - SMc04450 0.11 -1.9

Or see this region's nucleotide sequence