Experiment: 1-octen-3-ol 0.4933903333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1070 and SMa1073 overlap by 31 nucleotides SMa1073 and SMa1076 are separated by 576 nucleotides
SMa1070: SMa1070 - TRm23a transposase, at 584,979 to 586,571
SMa1070
SMa1073: SMa1073 - TRm23b IS ATP-binding protein, at 586,541 to 587,278
SMa1073
SMa1076: SMa1076 - hypothetical protein, at 587,855 to 588,439
SMa1076
Position (kb) 586
587
588 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 585.670 kb on + strand, within SMa1070 at 585.702 kb on + strand, within SMa1070 at 585.703 kb on - strand, within SMa1070 at 585.774 kb on - strand, within SMa1070 at 585.774 kb on - strand, within SMa1070 at 585.820 kb on - strand, within SMa1070 at 585.822 kb on - strand, within SMa1070 at 585.875 kb on + strand, within SMa1070 at 585.875 kb on + strand, within SMa1070 at 585.875 kb on + strand, within SMa1070 at 585.966 kb on + strand, within SMa1070 at 586.009 kb on - strand, within SMa1070 at 586.121 kb on + strand, within SMa1070 at 587.131 kb on + strand, within SMa1073 at 587.408 kb on + strand at 587.408 kb on + strand at 587.408 kb on + strand at 587.408 kb on + strand at 587.408 kb on + strand at 587.408 kb on + strand at 587.409 kb on - strand at 587.409 kb on - strand at 587.409 kb on - strand at 587.409 kb on - strand at 587.409 kb on - strand at 587.532 kb on + strand at 587.549 kb on - strand at 587.627 kb on + strand at 587.627 kb on + strand at 587.627 kb on + strand at 587.628 kb on - strand at 587.628 kb on - strand at 587.628 kb on - strand at 587.628 kb on - strand at 587.631 kb on + strand at 587.631 kb on + strand at 587.631 kb on + strand at 587.631 kb on + strand at 587.631 kb on + strand at 587.632 kb on - strand at 587.632 kb on - strand at 587.856 kb on + strand at 587.857 kb on - strand at 587.866 kb on + strand at 587.875 kb on + strand at 587.876 kb on - strand at 587.907 kb on + strand at 587.908 kb on - strand at 587.911 kb on + strand at 587.984 kb on + strand, within SMa1076 at 587.987 kb on - strand, within SMa1076 at 588.007 kb on - strand, within SMa1076 at 588.073 kb on - strand, within SMa1076 at 588.230 kb on + strand, within SMa1076 at 588.231 kb on - strand, within SMa1076
Per-strain Table
Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.4933903333 mM remove 585,670 + SMa1070 0.43 +0.6 585,702 + SMa1070 0.45 -0.1 585,703 - SMa1070 0.45 +1.2 585,774 - SMa1070 0.50 +0.0 585,774 - SMa1070 0.50 +0.9 585,820 - SMa1070 0.53 -1.0 585,822 - SMa1070 0.53 +1.0 585,875 + SMa1070 0.56 +0.1 585,875 + SMa1070 0.56 +0.0 585,875 + SMa1070 0.56 +0.3 585,966 + SMa1070 0.62 +0.5 586,009 - SMa1070 0.65 +0.6 586,121 + SMa1070 0.72 -0.2 587,131 + SMa1073 0.80 -0.6 587,408 + -0.3 587,408 + -0.0 587,408 + -0.5 587,408 + -0.1 587,408 + +0.1 587,408 + +0.9 587,409 - +0.2 587,409 - -0.4 587,409 - -0.2 587,409 - +0.1 587,409 - -0.1 587,532 + +0.0 587,549 - +3.8 587,627 + -0.4 587,627 + +0.8 587,627 + -0.9 587,628 - -0.1 587,628 - -1.2 587,628 - +0.1 587,628 - +0.2 587,631 + +0.2 587,631 + -0.3 587,631 + +1.2 587,631 + +0.1 587,631 + -1.5 587,632 - +0.1 587,632 - -0.1 587,856 + -0.4 587,857 - +0.5 587,866 + +0.1 587,875 + -0.6 587,876 - -0.3 587,907 + -0.7 587,908 - -0.7 587,911 + -0.7 587,984 + SMa1076 0.22 +0.8 587,987 - SMa1076 0.23 +0.3 588,007 - SMa1076 0.26 -1.2 588,073 - SMa1076 0.37 +0.5 588,230 + SMa1076 0.64 -0.2 588,231 - SMa1076 0.64 -0.2
Or see this region's nucleotide sequence