Strain Fitness in Sinorhizobium meliloti 1021 around SMc00953

Experiment: 1-octen-3-ol 0.5427293333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00951 and SMc00952 are separated by 82 nucleotidesSMc00952 and SMc00953 are separated by 90 nucleotidesSMc00953 and SMc00954 are separated by 519 nucleotides SMc00951: SMc00951 - hypothetical protein, at 1,777,786 to 1,779,600 SMc00951 SMc00952: SMc00952 - hypothetical protein, at 1,779,683 to 1,780,348 SMc00952 SMc00953: SMc00953 - transcriptional regulator, at 1,780,439 to 1,781,368 SMc00953 SMc00954: SMc00954 - hypothetical protein, at 1,781,888 to 1,784,107 SMc00954 Position (kb) 1780 1781 1782Strain fitness (log2 ratio) -2 -1 0 1 2at 1779.647 kb on + strandat 1779.647 kb on + strandat 1779.647 kb on + strandat 1779.647 kb on + strandat 1779.720 kb on + strandat 1779.720 kb on + strandat 1779.735 kb on - strandat 1779.813 kb on - strand, within SMc00952at 1779.854 kb on - strand, within SMc00952at 1779.854 kb on - strand, within SMc00952at 1779.854 kb on - strand, within SMc00952at 1780.105 kb on - strand, within SMc00952at 1780.260 kb on - strand, within SMc00952at 1780.260 kb on - strand, within SMc00952at 1780.473 kb on - strandat 1780.521 kb on + strandat 1780.522 kb on - strandat 1780.532 kb on + strand, within SMc00953at 1780.552 kb on + strand, within SMc00953at 1780.552 kb on + strand, within SMc00953at 1780.552 kb on + strand, within SMc00953at 1780.552 kb on + strand, within SMc00953at 1780.553 kb on - strand, within SMc00953at 1780.553 kb on - strand, within SMc00953at 1780.607 kb on + strand, within SMc00953at 1780.607 kb on + strand, within SMc00953at 1780.608 kb on - strand, within SMc00953at 1780.691 kb on + strand, within SMc00953at 1780.691 kb on + strand, within SMc00953at 1780.691 kb on + strand, within SMc00953at 1780.692 kb on - strand, within SMc00953at 1780.702 kb on + strand, within SMc00953at 1780.702 kb on + strand, within SMc00953at 1780.702 kb on + strand, within SMc00953at 1780.702 kb on + strand, within SMc00953at 1780.702 kb on + strand, within SMc00953at 1780.702 kb on + strand, within SMc00953at 1780.703 kb on - strand, within SMc00953at 1780.703 kb on - strand, within SMc00953at 1780.842 kb on + strand, within SMc00953at 1780.860 kb on - strand, within SMc00953at 1780.860 kb on - strand, within SMc00953at 1781.069 kb on + strand, within SMc00953at 1781.069 kb on + strand, within SMc00953at 1781.069 kb on + strand, within SMc00953at 1781.070 kb on - strand, within SMc00953at 1781.070 kb on - strand, within SMc00953at 1781.070 kb on - strand, within SMc00953at 1781.071 kb on + strand, within SMc00953at 1781.071 kb on + strand, within SMc00953at 1781.072 kb on - strand, within SMc00953at 1781.330 kb on + strandat 1781.331 kb on - strandat 1781.359 kb on - strandat 1781.359 kb on - strandat 1781.359 kb on - strandat 1781.501 kb on + strandat 1781.501 kb on + strandat 1781.501 kb on + strandat 1781.501 kb on + strandat 1781.502 kb on - strandat 1781.502 kb on - strandat 1781.502 kb on - strandat 1781.525 kb on + strandat 1781.526 kb on - strandat 1781.542 kb on + strandat 1781.542 kb on + strandat 1781.558 kb on + strandat 1781.559 kb on - strandat 1781.559 kb on - strandat 1781.685 kb on + strandat 1781.686 kb on - strandat 1781.740 kb on + strandat 1781.740 kb on + strandat 1781.740 kb on + strandat 1781.740 kb on + strandat 1781.740 kb on + strandat 1781.741 kb on - strandat 1781.741 kb on - strandat 1781.754 kb on + strandat 1781.754 kb on + strandat 1781.755 kb on - strandat 1781.755 kb on - strandat 1781.769 kb on + strandat 1781.865 kb on + strandat 1781.866 kb on - strandat 1781.866 kb on - strandat 1781.866 kb on - strandat 1781.866 kb on - strandat 1781.879 kb on + strandat 1781.879 kb on + strandat 1781.879 kb on + strandat 1781.880 kb on - strandat 1781.880 kb on - strandat 1782.033 kb on - strandat 1782.033 kb on - strandat 1782.152 kb on + strand, within SMc00954at 1782.152 kb on + strand, within SMc00954at 1782.203 kb on + strand, within SMc00954at 1782.203 kb on + strand, within SMc00954at 1782.204 kb on - strand, within SMc00954at 1782.206 kb on + strand, within SMc00954at 1782.206 kb on + strand, within SMc00954at 1782.206 kb on + strand, within SMc00954at 1782.207 kb on - strand, within SMc00954at 1782.278 kb on + strand, within SMc00954at 1782.280 kb on + strand, within SMc00954at 1782.280 kb on + strand, within SMc00954at 1782.280 kb on + strand, within SMc00954at 1782.280 kb on + strand, within SMc00954at 1782.281 kb on - strand, within SMc00954at 1782.281 kb on - strand, within SMc00954at 1782.281 kb on - strand, within SMc00954at 1782.317 kb on + strand, within SMc00954at 1782.323 kb on + strand, within SMc00954

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.5427293333 mM
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1,779,647 + -1.2
1,779,647 + -0.2
1,779,647 + +0.4
1,779,647 + -0.2
1,779,720 + +0.8
1,779,720 + -0.1
1,779,735 - -0.7
1,779,813 - SMc00952 0.20 -0.4
1,779,854 - SMc00952 0.26 -0.0
1,779,854 - SMc00952 0.26 +2.1
1,779,854 - SMc00952 0.26 -0.1
1,780,105 - SMc00952 0.63 +0.0
1,780,260 - SMc00952 0.87 -0.6
1,780,260 - SMc00952 0.87 -0.5
1,780,473 - +0.3
1,780,521 + -0.5
1,780,522 - -0.4
1,780,532 + SMc00953 0.10 +0.3
1,780,552 + SMc00953 0.12 -0.5
1,780,552 + SMc00953 0.12 -0.3
1,780,552 + SMc00953 0.12 -0.3
1,780,552 + SMc00953 0.12 -0.5
1,780,553 - SMc00953 0.12 -0.4
1,780,553 - SMc00953 0.12 -1.3
1,780,607 + SMc00953 0.18 +1.9
1,780,607 + SMc00953 0.18 -0.4
1,780,608 - SMc00953 0.18 +0.4
1,780,691 + SMc00953 0.27 +0.2
1,780,691 + SMc00953 0.27 -1.9
1,780,691 + SMc00953 0.27 -0.4
1,780,692 - SMc00953 0.27 -0.9
1,780,702 + SMc00953 0.28 +0.8
1,780,702 + SMc00953 0.28 -0.6
1,780,702 + SMc00953 0.28 -0.7
1,780,702 + SMc00953 0.28 -0.7
1,780,702 + SMc00953 0.28 +0.2
1,780,702 + SMc00953 0.28 -0.2
1,780,703 - SMc00953 0.28 -1.3
1,780,703 - SMc00953 0.28 +0.0
1,780,842 + SMc00953 0.43 -0.4
1,780,860 - SMc00953 0.45 -1.4
1,780,860 - SMc00953 0.45 -0.2
1,781,069 + SMc00953 0.68 -0.9
1,781,069 + SMc00953 0.68 -1.4
1,781,069 + SMc00953 0.68 +0.7
1,781,070 - SMc00953 0.68 +0.3
1,781,070 - SMc00953 0.68 -0.1
1,781,070 - SMc00953 0.68 -0.8
1,781,071 + SMc00953 0.68 -1.1
1,781,071 + SMc00953 0.68 +0.5
1,781,072 - SMc00953 0.68 +0.5
1,781,330 + -0.1
1,781,331 - -2.0
1,781,359 - -0.2
1,781,359 - +1.7
1,781,359 - -0.6
1,781,501 + +0.0
1,781,501 + -0.0
1,781,501 + +0.4
1,781,501 + -0.4
1,781,502 - -0.2
1,781,502 - -0.2
1,781,502 - -0.7
1,781,525 + +0.2
1,781,526 - -0.9
1,781,542 + -0.4
1,781,542 + +0.6
1,781,558 + -0.1
1,781,559 - +1.3
1,781,559 - +0.2
1,781,685 + +0.5
1,781,686 - +0.0
1,781,740 + -0.5
1,781,740 + -1.0
1,781,740 + +0.3
1,781,740 + -0.5
1,781,740 + +0.6
1,781,741 - -0.1
1,781,741 - +0.6
1,781,754 + +1.6
1,781,754 + +0.6
1,781,755 - +1.7
1,781,755 - -0.7
1,781,769 + +0.4
1,781,865 + -0.0
1,781,866 - -0.2
1,781,866 - -0.0
1,781,866 - +0.7
1,781,866 - -0.3
1,781,879 + +0.3
1,781,879 + +0.0
1,781,879 + -0.4
1,781,880 - -0.0
1,781,880 - -0.7
1,782,033 - -0.3
1,782,033 - +0.2
1,782,152 + SMc00954 0.12 +1.2
1,782,152 + SMc00954 0.12 -0.0
1,782,203 + SMc00954 0.14 -0.2
1,782,203 + SMc00954 0.14 +0.1
1,782,204 - SMc00954 0.14 +0.1
1,782,206 + SMc00954 0.14 -0.2
1,782,206 + SMc00954 0.14 -0.2
1,782,206 + SMc00954 0.14 -0.5
1,782,207 - SMc00954 0.14 +0.3
1,782,278 + SMc00954 0.18 -0.6
1,782,280 + SMc00954 0.18 -1.1
1,782,280 + SMc00954 0.18 +1.6
1,782,280 + SMc00954 0.18 +0.5
1,782,280 + SMc00954 0.18 -0.3
1,782,281 - SMc00954 0.18 +0.7
1,782,281 - SMc00954 0.18 +0.1
1,782,281 - SMc00954 0.18 -0.0
1,782,317 + SMc00954 0.19 -0.1
1,782,323 + SMc00954 0.20 +0.2

Or see this region's nucleotide sequence