Strain Fitness in Sinorhizobium meliloti 1021 around SMa2037

Experiment: 1-octen-3-ol 0.5427293333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2034 and SMa2037 are separated by 9 nucleotidesSMa2037 and SMa5011 are separated by 2 nucleotidesSMa5011 and SMa2041 overlap by 1 nucleotides SMa2034: SMa2034 - hypothetical protein, at 1,151,643 to 1,151,888 SMa2034 SMa2037: SMa2037 - Oxidoreductase, at 1,151,898 to 1,154,150 SMa2037 SMa5011: SMa5011 - oxidoreductase, at 1,154,153 to 1,154,629 SMa5011 SMa2041: SMa2041 - oxidoreductase, at 1,154,629 to 1,155,489 SMa2041 Position (kb) 1151 1152 1153 1154 1155Strain fitness (log2 ratio) -2 -1 0 1 2at 1151.077 kb on + strandat 1151.106 kb on - strandat 1151.279 kb on + strandat 1151.371 kb on - strandat 1151.376 kb on + strandat 1151.376 kb on + strandat 1151.454 kb on + strandat 1151.508 kb on - strandat 1151.509 kb on + strandat 1151.619 kb on - strandat 1151.717 kb on - strand, within SMa2034at 1151.811 kb on - strand, within SMa2034at 1151.884 kb on - strandat 1151.900 kb on - strandat 1151.942 kb on + strandat 1152.079 kb on - strandat 1152.079 kb on - strandat 1152.083 kb on + strandat 1152.083 kb on + strandat 1152.084 kb on - strandat 1152.154 kb on + strand, within SMa2037at 1152.158 kb on + strand, within SMa2037at 1152.158 kb on + strand, within SMa2037at 1152.158 kb on + strand, within SMa2037at 1152.159 kb on - strand, within SMa2037at 1152.159 kb on - strand, within SMa2037at 1152.159 kb on - strand, within SMa2037at 1152.160 kb on + strand, within SMa2037at 1152.160 kb on + strand, within SMa2037at 1152.161 kb on - strand, within SMa2037at 1152.161 kb on - strand, within SMa2037at 1152.161 kb on - strand, within SMa2037at 1152.208 kb on + strand, within SMa2037at 1152.209 kb on - strand, within SMa2037at 1152.266 kb on - strand, within SMa2037at 1152.317 kb on + strand, within SMa2037at 1152.318 kb on - strand, within SMa2037at 1152.536 kb on + strand, within SMa2037at 1152.537 kb on - strand, within SMa2037at 1152.913 kb on + strand, within SMa2037at 1153.046 kb on - strand, within SMa2037at 1153.081 kb on + strand, within SMa2037at 1153.081 kb on + strand, within SMa2037at 1153.081 kb on + strand, within SMa2037at 1153.111 kb on + strand, within SMa2037at 1153.160 kb on - strand, within SMa2037at 1153.476 kb on + strand, within SMa2037at 1153.476 kb on + strand, within SMa2037at 1153.531 kb on + strand, within SMa2037at 1153.531 kb on + strand, within SMa2037at 1153.532 kb on - strand, within SMa2037at 1153.532 kb on - strand, within SMa2037at 1153.532 kb on - strand, within SMa2037at 1153.532 kb on - strand, within SMa2037at 1153.754 kb on - strand, within SMa2037at 1153.754 kb on - strand, within SMa2037at 1153.754 kb on - strand, within SMa2037at 1153.834 kb on + strand, within SMa2037at 1153.834 kb on + strand, within SMa2037at 1153.877 kb on - strand, within SMa2037at 1153.877 kb on - strand, within SMa2037at 1153.877 kb on - strand, within SMa2037at 1154.067 kb on + strandat 1154.072 kb on + strandat 1154.073 kb on - strandat 1154.249 kb on + strand, within SMa5011at 1154.250 kb on - strand, within SMa5011at 1154.596 kb on + strandat 1154.597 kb on - strandat 1154.597 kb on - strandat 1154.597 kb on - strandat 1154.618 kb on + strandat 1154.618 kb on + strandat 1154.729 kb on - strand, within SMa2041at 1154.729 kb on - strand, within SMa2041at 1154.957 kb on + strand, within SMa2041at 1154.957 kb on + strand, within SMa2041

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.5427293333 mM
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1,151,077 + -1.2
1,151,106 - +0.2
1,151,279 + -0.8
1,151,371 - +0.1
1,151,376 + -0.7
1,151,376 + -1.3
1,151,454 + -0.4
1,151,508 - +0.0
1,151,509 + +0.5
1,151,619 - -0.1
1,151,717 - SMa2034 0.30 -1.5
1,151,811 - SMa2034 0.68 +1.9
1,151,884 - -0.3
1,151,900 - -0.2
1,151,942 + -0.3
1,152,079 - -0.1
1,152,079 - -0.6
1,152,083 + -0.8
1,152,083 + -1.2
1,152,084 - +0.7
1,152,154 + SMa2037 0.11 -0.9
1,152,158 + SMa2037 0.12 -1.5
1,152,158 + SMa2037 0.12 -0.5
1,152,158 + SMa2037 0.12 -1.4
1,152,159 - SMa2037 0.12 +1.3
1,152,159 - SMa2037 0.12 +0.5
1,152,159 - SMa2037 0.12 -0.5
1,152,160 + SMa2037 0.12 +0.3
1,152,160 + SMa2037 0.12 +0.1
1,152,161 - SMa2037 0.12 -0.5
1,152,161 - SMa2037 0.12 -1.4
1,152,161 - SMa2037 0.12 +1.6
1,152,208 + SMa2037 0.14 -0.8
1,152,209 - SMa2037 0.14 +0.2
1,152,266 - SMa2037 0.16 +0.9
1,152,317 + SMa2037 0.19 -0.9
1,152,318 - SMa2037 0.19 -0.1
1,152,536 + SMa2037 0.28 -0.2
1,152,537 - SMa2037 0.28 -2.2
1,152,913 + SMa2037 0.45 +0.8
1,153,046 - SMa2037 0.51 +0.4
1,153,081 + SMa2037 0.53 +0.3
1,153,081 + SMa2037 0.53 +0.3
1,153,081 + SMa2037 0.53 +0.9
1,153,111 + SMa2037 0.54 +0.2
1,153,160 - SMa2037 0.56 -1.1
1,153,476 + SMa2037 0.70 +1.0
1,153,476 + SMa2037 0.70 -0.9
1,153,531 + SMa2037 0.72 +0.9
1,153,531 + SMa2037 0.72 -1.0
1,153,532 - SMa2037 0.73 +0.0
1,153,532 - SMa2037 0.73 -0.5
1,153,532 - SMa2037 0.73 +0.3
1,153,532 - SMa2037 0.73 -0.3
1,153,754 - SMa2037 0.82 +0.9
1,153,754 - SMa2037 0.82 -0.9
1,153,754 - SMa2037 0.82 -1.1
1,153,834 + SMa2037 0.86 -0.9
1,153,834 + SMa2037 0.86 +0.6
1,153,877 - SMa2037 0.88 -0.1
1,153,877 - SMa2037 0.88 -0.9
1,153,877 - SMa2037 0.88 +0.1
1,154,067 + -0.4
1,154,072 + +0.2
1,154,073 - -0.3
1,154,249 + SMa5011 0.20 +0.5
1,154,250 - SMa5011 0.20 +1.9
1,154,596 + -1.4
1,154,597 - +0.6
1,154,597 - -0.1
1,154,597 - -0.4
1,154,618 + +0.1
1,154,618 + -0.7
1,154,729 - SMa2041 0.12 -0.1
1,154,729 - SMa2041 0.12 +0.4
1,154,957 + SMa2041 0.38 -0.1
1,154,957 + SMa2041 0.38 +0.5

Or see this region's nucleotide sequence