Experiment: 1-octen-3-ol 0.5427293333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0873 and SMa0874 are separated by 87 nucleotides SMa0874 and SMa0875 are separated by 6 nucleotides SMa0875 and SMa0876 are separated by 3 nucleotides
SMa0873: SMa0873 - nitrogenase molybdenum-cofactor biosynthesis protein NifN, at 483,756 to 485,081
SMa0873
SMa0874: SMa0874 - NodN dehydratase, at 485,169 to 485,654
SMa0874
SMa0875: SMa0875 - NolG efflux transporter, at 485,661 to 488,858
SMa0875
SMa0876: SMa0876 - NolF secretion protein, at 488,862 to 489,965
SMa0876
Position (kb) 485
486
487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2 at 484.728 kb on + strand, within SMa0873 at 484.740 kb on - strand, within SMa0873 at 484.828 kb on + strand, within SMa0873 at 484.936 kb on + strand, within SMa0873 at 485.283 kb on + strand, within SMa0874 at 485.287 kb on - strand, within SMa0874 at 485.302 kb on - strand, within SMa0874 at 485.302 kb on - strand, within SMa0874 at 485.520 kb on + strand, within SMa0874 at 485.521 kb on - strand, within SMa0874 at 485.666 kb on + strand at 485.785 kb on - strand at 485.809 kb on + strand at 485.810 kb on - strand at 485.810 kb on - strand at 485.856 kb on + strand at 486.116 kb on + strand, within SMa0875 at 486.116 kb on + strand, within SMa0875 at 486.116 kb on + strand, within SMa0875 at 486.117 kb on - strand, within SMa0875 at 486.117 kb on - strand, within SMa0875 at 486.117 kb on - strand, within SMa0875 at 486.134 kb on + strand, within SMa0875 at 486.236 kb on - strand, within SMa0875 at 486.525 kb on - strand, within SMa0875 at 486.637 kb on - strand, within SMa0875 at 486.637 kb on - strand, within SMa0875 at 487.069 kb on + strand, within SMa0875 at 487.069 kb on + strand, within SMa0875 at 487.120 kb on + strand, within SMa0875 at 487.120 kb on + strand, within SMa0875 at 487.121 kb on - strand, within SMa0875 at 487.240 kb on - strand, within SMa0875 at 487.248 kb on - strand, within SMa0875 at 487.422 kb on - strand, within SMa0875 at 487.458 kb on + strand, within SMa0875 at 487.618 kb on - strand, within SMa0875 at 487.618 kb on - strand, within SMa0875 at 487.641 kb on + strand, within SMa0875 at 487.766 kb on + strand, within SMa0875 at 488.039 kb on - strand, within SMa0875 at 488.039 kb on - strand, within SMa0875 at 488.201 kb on + strand, within SMa0875 at 488.201 kb on + strand, within SMa0875 at 488.272 kb on + strand, within SMa0875 at 488.272 kb on + strand, within SMa0875 at 488.357 kb on + strand, within SMa0875 at 488.357 kb on + strand, within SMa0875 at 488.358 kb on - strand, within SMa0875 at 488.358 kb on - strand, within SMa0875 at 488.358 kb on - strand, within SMa0875 at 488.605 kb on + strand at 488.707 kb on + strand at 488.707 kb on + strand at 488.708 kb on - strand at 488.708 kb on - strand at 488.774 kb on - strand at 488.816 kb on + strand at 488.843 kb on + strand at 488.844 kb on - strand at 489.105 kb on + strand, within SMa0876 at 489.106 kb on - strand, within SMa0876 at 489.252 kb on + strand, within SMa0876 at 489.264 kb on + strand, within SMa0876 at 489.483 kb on + strand, within SMa0876 at 489.484 kb on - strand, within SMa0876 at 489.718 kb on - strand, within SMa0876 at 489.718 kb on - strand, within SMa0876 at 489.755 kb on + strand, within SMa0876 at 489.755 kb on + strand at 489.755 kb on + strand, within SMa0876 at 489.756 kb on - strand, within SMa0876 at 489.756 kb on - strand, within SMa0876 at 489.774 kb on + strand, within SMa0876 at 489.786 kb on + strand, within SMa0876 at 489.788 kb on + strand, within SMa0876 at 489.789 kb on - strand, within SMa0876 at 489.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.5427293333 mM remove 484,728 + SMa0873 0.73 -1.0 484,740 - SMa0873 0.74 -0.3 484,828 + SMa0873 0.81 +0.0 484,936 + SMa0873 0.89 -0.8 485,283 + SMa0874 0.23 +2.0 485,287 - SMa0874 0.24 +1.0 485,302 - SMa0874 0.27 +0.3 485,302 - SMa0874 0.27 +1.2 485,520 + SMa0874 0.72 +1.0 485,521 - SMa0874 0.72 +1.2 485,666 + +0.0 485,785 - +0.6 485,809 + +0.2 485,810 - +0.0 485,810 - -0.1 485,856 + +0.7 486,116 + SMa0875 0.14 -2.1 486,116 + SMa0875 0.14 +0.8 486,116 + SMa0875 0.14 -0.5 486,117 - SMa0875 0.14 -0.7 486,117 - SMa0875 0.14 -0.0 486,117 - SMa0875 0.14 -0.1 486,134 + SMa0875 0.15 -0.5 486,236 - SMa0875 0.18 +0.6 486,525 - SMa0875 0.27 +0.3 486,637 - SMa0875 0.31 -2.1 486,637 - SMa0875 0.31 +1.3 487,069 + SMa0875 0.44 -0.6 487,069 + SMa0875 0.44 -0.1 487,120 + SMa0875 0.46 -0.1 487,120 + SMa0875 0.46 -1.6 487,121 - SMa0875 0.46 +0.2 487,240 - SMa0875 0.49 +0.4 487,248 - SMa0875 0.50 +0.2 487,422 - SMa0875 0.55 -1.0 487,458 + SMa0875 0.56 -0.0 487,618 - SMa0875 0.61 +0.3 487,618 - SMa0875 0.61 -0.4 487,641 + SMa0875 0.62 +0.2 487,766 + SMa0875 0.66 +0.3 488,039 - SMa0875 0.74 -0.0 488,039 - SMa0875 0.74 -1.9 488,201 + SMa0875 0.79 -0.2 488,201 + SMa0875 0.79 +0.4 488,272 + SMa0875 0.82 -0.3 488,272 + SMa0875 0.82 -0.9 488,357 + SMa0875 0.84 +1.6 488,357 + SMa0875 0.84 +0.2 488,358 - SMa0875 0.84 +0.9 488,358 - SMa0875 0.84 -1.9 488,358 - SMa0875 0.84 +0.2 488,605 + +0.3 488,707 + +0.2 488,707 + +0.1 488,708 - +0.3 488,708 - +0.4 488,774 - +1.0 488,816 + +0.1 488,843 + -0.5 488,844 - +1.0 489,105 + SMa0876 0.22 +1.0 489,106 - SMa0876 0.22 +0.5 489,252 + SMa0876 0.35 -1.2 489,264 + SMa0876 0.36 -1.6 489,483 + SMa0876 0.56 -0.8 489,484 - SMa0876 0.56 -1.3 489,718 - SMa0876 0.78 -0.4 489,718 - SMa0876 0.78 -0.2 489,755 + SMa0876 0.81 -0.6 489,755 + +1.2 489,755 + SMa0876 0.81 +0.0 489,756 - SMa0876 0.81 +0.1 489,756 - SMa0876 0.81 -1.4 489,774 + SMa0876 0.83 -0.1 489,786 + SMa0876 0.84 -0.5 489,788 + SMa0876 0.84 +0.0 489,789 - SMa0876 0.84 -1.1 489,858 - +2.6
Or see this region's nucleotide sequence