Experiment: 1-octen-3-ol 0.5427293333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1814 and SMa1817 overlap by 4 nucleotides SMa1817 and SMa1819 are separated by 13 nucleotides SMa1819 and SMa1820 overlap by 1 nucleotides SMa1820 and SMa1821 are separated by 67 nucleotides
SMa1814: SMa1814 - dioxygenase, at 1,027,980 to 1,029,572
SMa1814
SMa1817: SMa1817 - hypothetical protein, at 1,029,569 to 1,030,027
SMa1817
SMa1819: SMa1819 - hypothetical protein, at 1,030,041 to 1,032,026
SMa1819
SMa1820: SMa1820 - hypothetical protein, at 1,032,026 to 1,032,334
SMa1820
SMa1821: SMa1821 - hydrolase, at 1,032,402 to 1,033,052
SMa1821
Position (kb)
1030
1031
1032
1033 Strain fitness (log2 ratio)
-1
0
1
2 at 1029.235 kb on - strand, within SMa1814 at 1029.275 kb on + strand, within SMa1814 at 1029.275 kb on + strand, within SMa1814 at 1029.275 kb on + strand, within SMa1814 at 1029.742 kb on + strand, within SMa1817 at 1029.742 kb on + strand, within SMa1817 at 1029.742 kb on + strand, within SMa1817 at 1029.742 kb on + strand, within SMa1817 at 1029.743 kb on - strand, within SMa1817 at 1029.743 kb on - strand, within SMa1817 at 1029.743 kb on - strand, within SMa1817 at 1029.897 kb on + strand, within SMa1817 at 1029.897 kb on + strand, within SMa1817 at 1029.898 kb on - strand, within SMa1817 at 1029.898 kb on - strand, within SMa1817 at 1029.898 kb on - strand, within SMa1817 at 1029.899 kb on + strand, within SMa1817 at 1029.899 kb on + strand, within SMa1817 at 1029.900 kb on - strand, within SMa1817 at 1029.900 kb on - strand, within SMa1817 at 1029.900 kb on - strand, within SMa1817 at 1029.900 kb on - strand, within SMa1817 at 1029.900 kb on - strand, within SMa1817 at 1029.900 kb on - strand, within SMa1817 at 1029.925 kb on - strand, within SMa1817 at 1029.973 kb on + strand, within SMa1817 at 1029.974 kb on - strand, within SMa1817 at 1029.990 kb on + strand at 1030.042 kb on + strand at 1030.043 kb on - strand at 1030.231 kb on + strand at 1030.343 kb on + strand, within SMa1819 at 1030.344 kb on - strand, within SMa1819 at 1030.366 kb on - strand, within SMa1819 at 1030.593 kb on - strand, within SMa1819 at 1030.594 kb on + strand, within SMa1819 at 1030.594 kb on + strand at 1030.595 kb on - strand, within SMa1819 at 1030.595 kb on - strand, within SMa1819 at 1030.595 kb on - strand, within SMa1819 at 1030.708 kb on + strand, within SMa1819 at 1030.708 kb on + strand, within SMa1819 at 1030.709 kb on - strand, within SMa1819 at 1030.773 kb on + strand, within SMa1819 at 1030.774 kb on - strand, within SMa1819 at 1030.775 kb on + strand at 1030.775 kb on + strand, within SMa1819 at 1030.776 kb on - strand, within SMa1819 at 1030.926 kb on + strand, within SMa1819 at 1030.926 kb on + strand, within SMa1819 at 1031.071 kb on + strand, within SMa1819 at 1031.141 kb on - strand, within SMa1819 at 1031.207 kb on - strand, within SMa1819 at 1031.375 kb on + strand, within SMa1819 at 1031.435 kb on + strand, within SMa1819 at 1031.437 kb on + strand at 1031.685 kb on - strand, within SMa1819 at 1031.689 kb on + strand, within SMa1819 at 1031.689 kb on + strand, within SMa1819 at 1031.690 kb on - strand, within SMa1819 at 1032.073 kb on + strand, within SMa1820 at 1032.074 kb on - strand, within SMa1820 at 1032.074 kb on - strand, within SMa1820 at 1032.074 kb on - strand, within SMa1820 at 1032.125 kb on - strand, within SMa1820 at 1032.207 kb on - strand, within SMa1820 at 1032.264 kb on + strand, within SMa1820 at 1032.264 kb on + strand, within SMa1820 at 1032.265 kb on - strand, within SMa1820 at 1032.306 kb on + strand at 1032.306 kb on + strand at 1032.307 kb on - strand at 1032.307 kb on - strand at 1032.307 kb on - strand at 1032.457 kb on + strand at 1032.499 kb on + strand, within SMa1821 at 1032.500 kb on - strand, within SMa1821 at 1032.500 kb on - strand, within SMa1821 at 1032.542 kb on - strand, within SMa1821 at 1032.542 kb on - strand, within SMa1821 at 1032.542 kb on - strand, within SMa1821
Per-strain Table
Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.5427293333 mM remove 1,029,235 - SMa1814 0.79 -0.3 1,029,275 + SMa1814 0.81 +0.2 1,029,275 + SMa1814 0.81 +0.0 1,029,275 + SMa1814 0.81 +0.0 1,029,742 + SMa1817 0.38 -1.6 1,029,742 + SMa1817 0.38 +0.4 1,029,742 + SMa1817 0.38 -0.3 1,029,742 + SMa1817 0.38 +0.6 1,029,743 - SMa1817 0.38 -1.1 1,029,743 - SMa1817 0.38 +2.2 1,029,743 - SMa1817 0.38 +0.2 1,029,897 + SMa1817 0.71 +0.3 1,029,897 + SMa1817 0.71 +0.4 1,029,898 - SMa1817 0.72 +0.8 1,029,898 - SMa1817 0.72 -0.3 1,029,898 - SMa1817 0.72 +0.4 1,029,899 + SMa1817 0.72 +0.3 1,029,899 + SMa1817 0.72 +0.3 1,029,900 - SMa1817 0.72 -0.5 1,029,900 - SMa1817 0.72 +0.3 1,029,900 - SMa1817 0.72 +0.2 1,029,900 - SMa1817 0.72 +0.6 1,029,900 - SMa1817 0.72 -0.1 1,029,900 - SMa1817 0.72 +0.6 1,029,925 - SMa1817 0.78 +0.1 1,029,973 + SMa1817 0.88 +0.3 1,029,974 - SMa1817 0.88 +0.8 1,029,990 + -0.7 1,030,042 + +1.8 1,030,043 - -0.1 1,030,231 + +1.1 1,030,343 + SMa1819 0.15 -1.2 1,030,344 - SMa1819 0.15 -1.3 1,030,366 - SMa1819 0.16 -0.2 1,030,593 - SMa1819 0.28 -0.4 1,030,594 + SMa1819 0.28 -0.7 1,030,594 + -0.8 1,030,595 - SMa1819 0.28 -1.0 1,030,595 - SMa1819 0.28 -0.8 1,030,595 - SMa1819 0.28 -0.6 1,030,708 + SMa1819 0.34 +0.3 1,030,708 + SMa1819 0.34 -0.8 1,030,709 - SMa1819 0.34 +0.7 1,030,773 + SMa1819 0.37 -0.7 1,030,774 - SMa1819 0.37 +0.2 1,030,775 + +0.5 1,030,775 + SMa1819 0.37 +0.0 1,030,776 - SMa1819 0.37 -1.3 1,030,926 + SMa1819 0.45 -0.2 1,030,926 + SMa1819 0.45 -0.1 1,031,071 + SMa1819 0.52 -0.0 1,031,141 - SMa1819 0.55 -1.3 1,031,207 - SMa1819 0.59 -0.6 1,031,375 + SMa1819 0.67 +2.4 1,031,435 + SMa1819 0.70 -0.9 1,031,437 + +1.1 1,031,685 - SMa1819 0.83 -1.1 1,031,689 + SMa1819 0.83 -0.7 1,031,689 + SMa1819 0.83 -1.3 1,031,690 - SMa1819 0.83 -0.2 1,032,073 + SMa1820 0.15 -0.6 1,032,074 - SMa1820 0.16 -0.0 1,032,074 - SMa1820 0.16 -0.8 1,032,074 - SMa1820 0.16 +0.7 1,032,125 - SMa1820 0.32 -0.1 1,032,207 - SMa1820 0.59 +0.3 1,032,264 + SMa1820 0.77 +0.3 1,032,264 + SMa1820 0.77 +0.9 1,032,265 - SMa1820 0.77 -0.5 1,032,306 + +1.2 1,032,306 + -1.1 1,032,307 - -0.6 1,032,307 - +0.5 1,032,307 - +0.6 1,032,457 + -0.1 1,032,499 + SMa1821 0.15 -0.8 1,032,500 - SMa1821 0.15 -1.2 1,032,500 - SMa1821 0.15 +0.3 1,032,542 - SMa1821 0.22 -0.1 1,032,542 - SMa1821 0.22 +0.2 1,032,542 - SMa1821 0.22 -0.1
Or see this region's nucleotide sequence