Experiment: 1-octen-3-ol 0.5427293333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02545 and SMc02544 are separated by 71 nucleotides SMc02544 and SMc02543 are separated by 242 nucleotides
SMc02545: SMc02545 - hypothetical protein, at 1,214,959 to 1,215,900
SMc02545
SMc02544: SMc02544 - hypothetical protein, at 1,215,972 to 1,216,589
SMc02544
SMc02543: SMc02543 - hypothetical protein, at 1,216,832 to 1,218,541
SMc02543
Position (kb)
1215
1216
1217 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1215.034 kb on + strand at 1215.034 kb on + strand at 1215.034 kb on + strand at 1215.035 kb on - strand at 1215.082 kb on - strand, within SMc02545 at 1215.111 kb on + strand, within SMc02545 at 1215.111 kb on + strand, within SMc02545 at 1215.111 kb on + strand, within SMc02545 at 1215.112 kb on - strand, within SMc02545 at 1215.253 kb on + strand, within SMc02545 at 1215.253 kb on + strand, within SMc02545 at 1215.253 kb on + strand, within SMc02545 at 1215.253 kb on + strand, within SMc02545 at 1215.253 kb on + strand, within SMc02545 at 1215.253 kb on + strand, within SMc02545 at 1215.254 kb on - strand, within SMc02545 at 1215.254 kb on - strand, within SMc02545 at 1215.304 kb on + strand, within SMc02545 at 1215.304 kb on + strand, within SMc02545 at 1215.304 kb on + strand, within SMc02545 at 1215.304 kb on + strand, within SMc02545 at 1215.305 kb on - strand, within SMc02545 at 1215.305 kb on - strand, within SMc02545 at 1215.306 kb on + strand, within SMc02545 at 1215.306 kb on + strand, within SMc02545 at 1215.307 kb on - strand, within SMc02545 at 1215.307 kb on - strand, within SMc02545 at 1215.307 kb on - strand, within SMc02545 at 1215.307 kb on - strand, within SMc02545 at 1215.307 kb on - strand, within SMc02545 at 1215.307 kb on - strand, within SMc02545 at 1215.562 kb on + strand, within SMc02545 at 1215.676 kb on + strand, within SMc02545 at 1215.677 kb on - strand, within SMc02545 at 1215.727 kb on + strand, within SMc02545 at 1215.727 kb on + strand, within SMc02545 at 1215.727 kb on + strand, within SMc02545 at 1215.727 kb on + strand, within SMc02545 at 1215.728 kb on - strand, within SMc02545 at 1215.728 kb on - strand, within SMc02545 at 1215.728 kb on - strand, within SMc02545 at 1215.728 kb on - strand, within SMc02545 at 1215.728 kb on - strand, within SMc02545 at 1215.728 kb on - strand, within SMc02545 at 1215.728 kb on - strand, within SMc02545 at 1215.835 kb on + strand at 1215.836 kb on - strand at 1215.836 kb on - strand at 1215.969 kb on - strand at 1216.457 kb on - strand, within SMc02544 at 1216.550 kb on - strand at 1216.683 kb on + strand at 1216.684 kb on - strand at 1216.716 kb on + strand at 1216.754 kb on - strand at 1216.754 kb on - strand at 1216.755 kb on + strand at 1216.755 kb on + strand at 1216.756 kb on - strand at 1216.803 kb on + strand at 1216.803 kb on + strand at 1216.803 kb on + strand at 1216.837 kb on + strand at 1216.837 kb on + strand at 1217.344 kb on + strand, within SMc02543 at 1217.344 kb on + strand, within SMc02543 at 1217.345 kb on - strand, within SMc02543 at 1217.376 kb on + strand, within SMc02543 at 1217.377 kb on - strand, within SMc02543 at 1217.564 kb on + strand, within SMc02543 at 1217.564 kb on + strand, within SMc02543 at 1217.564 kb on + strand, within SMc02543 at 1217.564 kb on + strand, within SMc02543 at 1217.564 kb on + strand, within SMc02543 at 1217.564 kb on + strand, within SMc02543 at 1217.565 kb on - strand, within SMc02543
Per-strain Table
Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.5427293333 mM remove 1,215,034 + +0.4 1,215,034 + -0.1 1,215,034 + +0.0 1,215,035 - +0.5 1,215,082 - SMc02545 0.13 +1.0 1,215,111 + SMc02545 0.16 -0.1 1,215,111 + SMc02545 0.16 +0.1 1,215,111 + SMc02545 0.16 +0.0 1,215,112 - SMc02545 0.16 -1.7 1,215,253 + SMc02545 0.31 -2.4 1,215,253 + SMc02545 0.31 +0.0 1,215,253 + SMc02545 0.31 -0.5 1,215,253 + SMc02545 0.31 +1.2 1,215,253 + SMc02545 0.31 +0.5 1,215,253 + SMc02545 0.31 +0.4 1,215,254 - SMc02545 0.31 -0.2 1,215,254 - SMc02545 0.31 -0.8 1,215,304 + SMc02545 0.37 +0.3 1,215,304 + SMc02545 0.37 +0.8 1,215,304 + SMc02545 0.37 +0.5 1,215,304 + SMc02545 0.37 +0.3 1,215,305 - SMc02545 0.37 +0.9 1,215,305 - SMc02545 0.37 -0.4 1,215,306 + SMc02545 0.37 +0.8 1,215,306 + SMc02545 0.37 -1.0 1,215,307 - SMc02545 0.37 -0.8 1,215,307 - SMc02545 0.37 -2.4 1,215,307 - SMc02545 0.37 -1.4 1,215,307 - SMc02545 0.37 -0.3 1,215,307 - SMc02545 0.37 +0.0 1,215,307 - SMc02545 0.37 -1.3 1,215,562 + SMc02545 0.64 -0.1 1,215,676 + SMc02545 0.76 -0.1 1,215,677 - SMc02545 0.76 +0.3 1,215,727 + SMc02545 0.82 +0.1 1,215,727 + SMc02545 0.82 +0.0 1,215,727 + SMc02545 0.82 +0.0 1,215,727 + SMc02545 0.82 -0.9 1,215,728 - SMc02545 0.82 -0.3 1,215,728 - SMc02545 0.82 -0.1 1,215,728 - SMc02545 0.82 -0.7 1,215,728 - SMc02545 0.82 -0.1 1,215,728 - SMc02545 0.82 -0.1 1,215,728 - SMc02545 0.82 +1.0 1,215,728 - SMc02545 0.82 -0.4 1,215,835 + -0.1 1,215,836 - -0.4 1,215,836 - +0.5 1,215,969 - -0.0 1,216,457 - SMc02544 0.78 +0.9 1,216,550 - +0.4 1,216,683 + +1.3 1,216,684 - +2.0 1,216,716 + -0.5 1,216,754 - +2.0 1,216,754 - +0.0 1,216,755 + -0.4 1,216,755 + +0.1 1,216,756 - +0.2 1,216,803 + +0.4 1,216,803 + -0.1 1,216,803 + -0.3 1,216,837 + -1.0 1,216,837 + +1.8 1,217,344 + SMc02543 0.30 +1.6 1,217,344 + SMc02543 0.30 +0.4 1,217,345 - SMc02543 0.30 -0.3 1,217,376 + SMc02543 0.32 +0.6 1,217,377 - SMc02543 0.32 -0.6 1,217,564 + SMc02543 0.43 -1.0 1,217,564 + SMc02543 0.43 +0.0 1,217,564 + SMc02543 0.43 -0.5 1,217,564 + SMc02543 0.43 +1.0 1,217,564 + SMc02543 0.43 +0.4 1,217,564 + SMc02543 0.43 +0.4 1,217,565 - SMc02543 0.43 +0.7
Or see this region's nucleotide sequence