Strain Fitness in Sinorhizobium meliloti 1021 around SMc01365

Experiment: 1-octen-3-ol 0.5427293333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc01367 and SMc01366 overlap by 4 nucleotidesSMc01366 and SMc01365 are separated by 36 nucleotidesSMc01365 and SMc01364 are separated by 2 nucleotides SMc01367: SMc01367 - hypothetical protein, at 1,413,420 to 1,414,136 SMc01367 SMc01366: SMc01366 - hypothetical protein, at 1,414,133 to 1,414,588 SMc01366 SMc01365: SMc01365 - exoribonuclease II protein, at 1,414,625 to 1,416,994 SMc01365 SMc01364: SMc01364 - DNA topoisomerase I, at 1,416,997 to 1,419,699 SMc01364 Position (kb) 1414 1415 1416 1417Strain fitness (log2 ratio) -2 -1 0 1 2at 1413.698 kb on + strand, within SMc01367at 1413.698 kb on + strand, within SMc01367at 1413.713 kb on + strand, within SMc01367at 1413.714 kb on - strand, within SMc01367at 1413.716 kb on - strand, within SMc01367at 1413.716 kb on - strand, within SMc01367at 1413.786 kb on + strand, within SMc01367at 1413.828 kb on + strand, within SMc01367at 1413.961 kb on + strand, within SMc01367at 1413.961 kb on + strand, within SMc01367at 1413.961 kb on + strand, within SMc01367at 1413.962 kb on - strand, within SMc01367at 1414.310 kb on - strand, within SMc01366at 1414.336 kb on + strand, within SMc01366at 1414.336 kb on + strand, within SMc01366at 1414.338 kb on + strand, within SMc01366at 1414.338 kb on + strand, within SMc01366at 1414.379 kb on - strand, within SMc01366at 1414.379 kb on - strand, within SMc01366at 1414.380 kb on + strand, within SMc01366at 1414.781 kb on + strandat 1414.781 kb on + strandat 1414.782 kb on - strandat 1414.863 kb on + strand, within SMc01365at 1414.864 kb on - strand, within SMc01365at 1414.889 kb on - strand, within SMc01365at 1414.889 kb on - strand, within SMc01365at 1414.892 kb on + strand, within SMc01365at 1414.893 kb on - strand, within SMc01365at 1414.893 kb on - strand, within SMc01365at 1414.893 kb on - strand, within SMc01365at 1414.895 kb on - strand, within SMc01365at 1414.895 kb on - strand, within SMc01365at 1415.026 kb on + strand, within SMc01365at 1415.081 kb on - strand, within SMc01365at 1415.112 kb on - strand, within SMc01365at 1415.112 kb on - strand, within SMc01365at 1415.202 kb on + strand, within SMc01365at 1415.203 kb on - strand, within SMc01365at 1415.233 kb on + strand, within SMc01365at 1415.247 kb on + strand, within SMc01365at 1415.298 kb on + strand, within SMc01365at 1415.299 kb on - strand, within SMc01365at 1415.442 kb on + strand, within SMc01365at 1415.442 kb on + strand, within SMc01365at 1415.443 kb on - strand, within SMc01365at 1415.443 kb on - strand, within SMc01365at 1415.644 kb on + strand, within SMc01365at 1415.649 kb on + strand, within SMc01365at 1415.649 kb on + strand, within SMc01365at 1415.678 kb on - strand, within SMc01365at 1415.685 kb on - strand, within SMc01365at 1415.739 kb on + strand, within SMc01365at 1415.739 kb on + strand, within SMc01365at 1415.739 kb on + strand, within SMc01365at 1415.783 kb on - strand, within SMc01365at 1415.783 kb on - strand, within SMc01365at 1415.876 kb on + strand, within SMc01365at 1416.086 kb on + strand, within SMc01365at 1416.086 kb on + strand, within SMc01365at 1416.190 kb on + strand, within SMc01365at 1416.191 kb on - strand, within SMc01365at 1416.474 kb on + strand, within SMc01365at 1416.475 kb on - strand, within SMc01365at 1416.664 kb on + strand, within SMc01365at 1416.664 kb on + strand, within SMc01365at 1416.774 kb on - strandat 1417.265 kb on + strandat 1417.266 kb on - strandat 1417.266 kb on - strandat 1417.294 kb on - strand, within SMc01364at 1417.294 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.5427293333 mM
remove
1,413,698 + SMc01367 0.39 +0.6
1,413,698 + SMc01367 0.39 +1.2
1,413,713 + SMc01367 0.41 +0.4
1,413,714 - SMc01367 0.41 -0.4
1,413,716 - SMc01367 0.41 +1.2
1,413,716 - SMc01367 0.41 +0.0
1,413,786 + SMc01367 0.51 -0.3
1,413,828 + SMc01367 0.57 -0.4
1,413,961 + SMc01367 0.75 +0.4
1,413,961 + SMc01367 0.75 -0.1
1,413,961 + SMc01367 0.75 -0.8
1,413,962 - SMc01367 0.76 +0.8
1,414,310 - SMc01366 0.39 +0.2
1,414,336 + SMc01366 0.45 +0.6
1,414,336 + SMc01366 0.45 -0.7
1,414,338 + SMc01366 0.45 -0.4
1,414,338 + SMc01366 0.45 +0.2
1,414,379 - SMc01366 0.54 -1.1
1,414,379 - SMc01366 0.54 +0.1
1,414,380 + SMc01366 0.54 +0.4
1,414,781 + +0.3
1,414,781 + +0.2
1,414,782 - +0.4
1,414,863 + SMc01365 0.10 -0.2
1,414,864 - SMc01365 0.10 -0.6
1,414,889 - SMc01365 0.11 +0.9
1,414,889 - SMc01365 0.11 +0.0
1,414,892 + SMc01365 0.11 -0.1
1,414,893 - SMc01365 0.11 +2.3
1,414,893 - SMc01365 0.11 +0.2
1,414,893 - SMc01365 0.11 -0.8
1,414,895 - SMc01365 0.11 -0.2
1,414,895 - SMc01365 0.11 +0.9
1,415,026 + SMc01365 0.17 -0.3
1,415,081 - SMc01365 0.19 -0.1
1,415,112 - SMc01365 0.21 -0.5
1,415,112 - SMc01365 0.21 -0.5
1,415,202 + SMc01365 0.24 -1.9
1,415,203 - SMc01365 0.24 +0.6
1,415,233 + SMc01365 0.26 -0.3
1,415,247 + SMc01365 0.26 -1.1
1,415,298 + SMc01365 0.28 -0.6
1,415,299 - SMc01365 0.28 +1.6
1,415,442 + SMc01365 0.34 -0.6
1,415,442 + SMc01365 0.34 -0.1
1,415,443 - SMc01365 0.35 -1.8
1,415,443 - SMc01365 0.35 -0.1
1,415,644 + SMc01365 0.43 -0.2
1,415,649 + SMc01365 0.43 +0.4
1,415,649 + SMc01365 0.43 +0.1
1,415,678 - SMc01365 0.44 +0.3
1,415,685 - SMc01365 0.45 -0.8
1,415,739 + SMc01365 0.47 -0.9
1,415,739 + SMc01365 0.47 -0.4
1,415,739 + SMc01365 0.47 -0.1
1,415,783 - SMc01365 0.49 -0.7
1,415,783 - SMc01365 0.49 +0.2
1,415,876 + SMc01365 0.53 -0.3
1,416,086 + SMc01365 0.62 -0.9
1,416,086 + SMc01365 0.62 +0.6
1,416,190 + SMc01365 0.66 -0.3
1,416,191 - SMc01365 0.66 +0.3
1,416,474 + SMc01365 0.78 -0.1
1,416,475 - SMc01365 0.78 +0.2
1,416,664 + SMc01365 0.86 -0.8
1,416,664 + SMc01365 0.86 +1.3
1,416,774 - +0.4
1,417,265 + -0.4
1,417,266 - -0.6
1,417,266 - -1.7
1,417,294 - SMc01364 0.11 +0.1
1,417,294 - -0.3

Or see this region's nucleotide sequence