Strain Fitness in Sinorhizobium meliloti 1021 around SMc00339

Experiment: 1-octen-3-ol 0.5427293333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00338 and SMc00434 are separated by 391 nucleotidesSMc00434 and SMc00339 are separated by 127 nucleotidesSMc00339 and SMc00340 are separated by 93 nucleotides SMc00338: SMc00338 - hypothetical protein, at 293,383 to 293,910 SMc00338 SMc00434: SMc00434 - tRNA-Leu, at 294,302 to 294,388 SMc00434 SMc00339: SMc00339 - adenylate cyclase, at 294,516 to 296,513 SMc00339 SMc00340: SMc00340 - oxidoreductase, at 296,607 to 297,653 SMc00340 Position (kb) 294 295 296 297Strain fitness (log2 ratio) -2 -1 0 1 2at 293.523 kb on - strand, within SMc00338at 293.525 kb on + strand, within SMc00338at 293.525 kb on + strand, within SMc00338at 293.526 kb on - strand, within SMc00338at 293.526 kb on - strand, within SMc00338at 293.526 kb on - strand, within SMc00338at 293.526 kb on - strand, within SMc00338at 293.536 kb on - strand, within SMc00338at 293.536 kb on - strandat 293.552 kb on + strand, within SMc00338at 293.553 kb on - strand, within SMc00338at 293.576 kb on + strand, within SMc00338at 293.576 kb on + strand, within SMc00338at 293.577 kb on - strand, within SMc00338at 293.577 kb on - strand, within SMc00338at 293.577 kb on - strand, within SMc00338at 293.577 kb on - strand, within SMc00338at 293.577 kb on - strand, within SMc00338at 293.579 kb on + strand, within SMc00338at 293.591 kb on + strand, within SMc00338at 293.592 kb on - strand, within SMc00338at 293.592 kb on - strand, within SMc00338at 293.607 kb on - strand, within SMc00338at 293.607 kb on - strand, within SMc00338at 293.609 kb on + strand, within SMc00338at 293.609 kb on + strand, within SMc00338at 293.610 kb on - strand, within SMc00338at 293.610 kb on - strand, within SMc00338at 293.613 kb on - strand, within SMc00338at 293.643 kb on - strand, within SMc00338at 293.657 kb on + strand, within SMc00338at 293.658 kb on - strand, within SMc00338at 293.681 kb on + strand, within SMc00338at 293.703 kb on - strand, within SMc00338at 293.720 kb on + strand, within SMc00338at 293.720 kb on + strand, within SMc00338at 293.724 kb on - strand, within SMc00338at 293.724 kb on - strand, within SMc00338at 293.738 kb on + strand, within SMc00338at 293.757 kb on - strand, within SMc00338at 293.845 kb on + strand, within SMc00338at 293.846 kb on - strand, within SMc00338at 293.981 kb on - strandat 294.003 kb on + strandat 294.004 kb on - strandat 294.083 kb on + strandat 294.083 kb on + strandat 294.084 kb on - strandat 294.084 kb on - strandat 294.150 kb on - strandat 294.540 kb on - strandat 294.574 kb on + strandat 294.574 kb on + strandat 294.575 kb on - strandat 294.689 kb on - strandat 294.746 kb on + strand, within SMc00339at 294.747 kb on - strand, within SMc00339at 294.747 kb on - strand, within SMc00339at 294.748 kb on + strand, within SMc00339at 294.748 kb on + strand, within SMc00339at 294.748 kb on + strand, within SMc00339at 294.748 kb on + strand, within SMc00339at 294.748 kb on + strand, within SMc00339at 295.081 kb on + strand, within SMc00339at 295.081 kb on + strand, within SMc00339at 295.082 kb on - strand, within SMc00339at 295.082 kb on - strand, within SMc00339at 295.082 kb on - strand, within SMc00339at 295.180 kb on + strand, within SMc00339at 295.180 kb on + strand, within SMc00339at 295.181 kb on - strand, within SMc00339at 295.269 kb on - strand, within SMc00339at 295.269 kb on - strand, within SMc00339at 295.269 kb on - strand, within SMc00339at 295.516 kb on + strand, within SMc00339at 295.517 kb on - strand, within SMc00339at 295.813 kb on - strand, within SMc00339at 295.849 kb on + strand, within SMc00339at 295.850 kb on - strand, within SMc00339at 296.122 kb on + strand, within SMc00339at 296.306 kb on + strand, within SMc00339at 296.306 kb on + strand, within SMc00339at 296.306 kb on + strand, within SMc00339at 296.307 kb on - strand, within SMc00339at 296.390 kb on + strandat 296.390 kb on + strandat 296.390 kb on + strandat 296.391 kb on - strandat 296.546 kb on + strandat 296.580 kb on - strandat 297.367 kb on + strand, within SMc00340at 297.367 kb on + strand, within SMc00340at 297.367 kb on + strand, within SMc00340at 297.469 kb on + strand, within SMc00340at 297.470 kb on - strand, within SMc00340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.5427293333 mM
remove
293,523 - SMc00338 0.27 +0.8
293,525 + SMc00338 0.27 +0.5
293,525 + SMc00338 0.27 +0.6
293,526 - SMc00338 0.27 +0.3
293,526 - SMc00338 0.27 -1.7
293,526 - SMc00338 0.27 +0.3
293,526 - SMc00338 0.27 -0.2
293,536 - SMc00338 0.29 +0.7
293,536 - +0.4
293,552 + SMc00338 0.32 -0.1
293,553 - SMc00338 0.32 -0.0
293,576 + SMc00338 0.37 +0.1
293,576 + SMc00338 0.37 -0.4
293,577 - SMc00338 0.37 +0.5
293,577 - SMc00338 0.37 -0.0
293,577 - SMc00338 0.37 +0.1
293,577 - SMc00338 0.37 +0.1
293,577 - SMc00338 0.37 -0.2
293,579 + SMc00338 0.37 -0.0
293,591 + SMc00338 0.39 +0.3
293,592 - SMc00338 0.40 -0.3
293,592 - SMc00338 0.40 +0.4
293,607 - SMc00338 0.42 +0.7
293,607 - SMc00338 0.42 +0.2
293,609 + SMc00338 0.43 -1.7
293,609 + SMc00338 0.43 -0.3
293,610 - SMc00338 0.43 +0.1
293,610 - SMc00338 0.43 +0.2
293,613 - SMc00338 0.44 -0.1
293,643 - SMc00338 0.49 -0.1
293,657 + SMc00338 0.52 -1.8
293,658 - SMc00338 0.52 -0.7
293,681 + SMc00338 0.56 -0.1
293,703 - SMc00338 0.61 -0.0
293,720 + SMc00338 0.64 -0.3
293,720 + SMc00338 0.64 +0.5
293,724 - SMc00338 0.65 +0.0
293,724 - SMc00338 0.65 -0.3
293,738 + SMc00338 0.67 -0.1
293,757 - SMc00338 0.71 -0.3
293,845 + SMc00338 0.88 +0.8
293,846 - SMc00338 0.88 +0.5
293,981 - +0.1
294,003 + -0.2
294,004 - +0.7
294,083 + +0.1
294,083 + -0.2
294,084 - +0.8
294,084 - -1.0
294,150 - -0.3
294,540 - -0.2
294,574 + +0.4
294,574 + -1.3
294,575 - +1.4
294,689 - +0.6
294,746 + SMc00339 0.12 +0.4
294,747 - SMc00339 0.12 +0.4
294,747 - SMc00339 0.12 +1.0
294,748 + SMc00339 0.12 +1.0
294,748 + SMc00339 0.12 -0.0
294,748 + SMc00339 0.12 +0.6
294,748 + SMc00339 0.12 +0.0
294,748 + SMc00339 0.12 -0.1
295,081 + SMc00339 0.28 +0.5
295,081 + SMc00339 0.28 +0.9
295,082 - SMc00339 0.28 -0.5
295,082 - SMc00339 0.28 +0.3
295,082 - SMc00339 0.28 -0.2
295,180 + SMc00339 0.33 -0.0
295,180 + SMc00339 0.33 +0.5
295,181 - SMc00339 0.33 +0.7
295,269 - SMc00339 0.38 +0.8
295,269 - SMc00339 0.38 +0.0
295,269 - SMc00339 0.38 +1.3
295,516 + SMc00339 0.50 +1.1
295,517 - SMc00339 0.50 +0.3
295,813 - SMc00339 0.65 +0.3
295,849 + SMc00339 0.67 +0.4
295,850 - SMc00339 0.67 +0.1
296,122 + SMc00339 0.80 +0.3
296,306 + SMc00339 0.90 +0.2
296,306 + SMc00339 0.90 +0.6
296,306 + SMc00339 0.90 -1.9
296,307 - SMc00339 0.90 +1.0
296,390 + -1.2
296,390 + +0.1
296,390 + +2.0
296,391 - +0.3
296,546 + -1.4
296,580 - -0.1
297,367 + SMc00340 0.73 +0.4
297,367 + SMc00340 0.73 +0.1
297,367 + SMc00340 0.73 -0.1
297,469 + SMc00340 0.82 -0.0
297,470 - SMc00340 0.82 +0.1

Or see this region's nucleotide sequence