Experiment: 1-octen-3-ol 0.5427293333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0981 and SMa0983 are separated by 148 nucleotides SMa0983 and SMa0985 are separated by 120 nucleotides SMa0985 and SMa0988 are separated by 26 nucleotides SMa0988 and SMa0990 are separated by 657 nucleotides
SMa0981: SMa0981 - NtrR2 transcription regulator, at 546,465 to 546,884
SMa0981
SMa0983: SMa0983 - hypothetical protein, at 547,033 to 547,404
SMa0983
SMa0985: SMa0985 - LysR family transcriptional regulator, at 547,525 to 548,370
SMa0985
SMa0988: SMa0988 - hypothetical protein, at 548,397 to 548,690
SMa0988
SMa0990: SMa0990 - hypothetical protein, at 549,348 to 549,827
SMa0990
Position (kb) 547
548
549 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 546.530 kb on + strand, within SMa0981 at 546.683 kb on + strand, within SMa0981 at 546.683 kb on + strand, within SMa0981 at 546.684 kb on - strand, within SMa0981 at 546.684 kb on - strand, within SMa0981 at 546.684 kb on - strand, within SMa0981 at 546.714 kb on + strand, within SMa0981 at 546.750 kb on + strand, within SMa0981 at 546.751 kb on - strand, within SMa0981 at 546.751 kb on - strand, within SMa0981 at 546.765 kb on - strand, within SMa0981 at 546.795 kb on + strand, within SMa0981 at 546.855 kb on - strand at 546.871 kb on + strand at 546.872 kb on - strand at 546.872 kb on - strand at 546.872 kb on - strand at 546.968 kb on + strand at 547.004 kb on + strand at 547.069 kb on + strand at 547.073 kb on + strand, within SMa0983 at 547.074 kb on - strand, within SMa0983 at 547.074 kb on - strand, within SMa0983 at 547.090 kb on + strand, within SMa0983 at 547.091 kb on - strand, within SMa0983 at 547.169 kb on + strand, within SMa0983 at 547.181 kb on + strand, within SMa0983 at 547.181 kb on + strand, within SMa0983 at 547.293 kb on + strand, within SMa0983 at 547.329 kb on + strand, within SMa0983 at 547.329 kb on + strand, within SMa0983 at 547.330 kb on - strand, within SMa0983 at 547.339 kb on + strand, within SMa0983 at 547.339 kb on + strand, within SMa0983 at 547.339 kb on + strand, within SMa0983 at 547.340 kb on - strand, within SMa0983 at 547.340 kb on - strand, within SMa0983 at 547.559 kb on - strand at 547.908 kb on - strand, within SMa0985 at 547.981 kb on + strand, within SMa0985 at 547.981 kb on + strand, within SMa0985 at 547.981 kb on + strand, within SMa0985 at 547.981 kb on + strand, within SMa0985 at 547.981 kb on + strand, within SMa0985 at 547.982 kb on - strand, within SMa0985 at 547.982 kb on - strand, within SMa0985 at 547.997 kb on + strand, within SMa0985 at 547.997 kb on + strand, within SMa0985 at 548.137 kb on + strand, within SMa0985 at 548.161 kb on - strand, within SMa0985 at 548.177 kb on + strand, within SMa0985 at 548.177 kb on + strand, within SMa0985 at 548.177 kb on + strand, within SMa0985 at 548.178 kb on - strand, within SMa0985 at 548.178 kb on - strand, within SMa0985 at 548.178 kb on - strand, within SMa0985 at 548.245 kb on + strand, within SMa0985 at 548.246 kb on - strand, within SMa0985 at 548.437 kb on - strand, within SMa0988 at 548.492 kb on + strand, within SMa0988 at 548.493 kb on - strand, within SMa0988 at 548.510 kb on + strand, within SMa0988 at 548.510 kb on + strand, within SMa0988 at 548.510 kb on + strand, within SMa0988 at 548.510 kb on + strand, within SMa0988 at 548.514 kb on + strand, within SMa0988 at 548.522 kb on + strand, within SMa0988 at 548.523 kb on - strand, within SMa0988 at 548.523 kb on - strand at 548.608 kb on - strand, within SMa0988 at 548.660 kb on + strand, within SMa0988 at 548.660 kb on + strand, within SMa0988 at 548.661 kb on - strand at 548.661 kb on - strand at 548.674 kb on - strand at 548.724 kb on + strand at 548.725 kb on - strand at 548.919 kb on - strand at 548.919 kb on - strand at 549.238 kb on + strand at 549.238 kb on + strand at 549.238 kb on + strand at 549.239 kb on - strand at 549.330 kb on + strand at 549.331 kb on - strand at 549.331 kb on - strand at 549.331 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.5427293333 mM remove 546,530 + SMa0981 0.15 +0.5 546,683 + SMa0981 0.52 +0.1 546,683 + SMa0981 0.52 -0.7 546,684 - SMa0981 0.52 +0.1 546,684 - SMa0981 0.52 -0.6 546,684 - SMa0981 0.52 -1.3 546,714 + SMa0981 0.59 +0.1 546,750 + SMa0981 0.68 +1.5 546,751 - SMa0981 0.68 -0.3 546,751 - SMa0981 0.68 +0.3 546,765 - SMa0981 0.71 +0.3 546,795 + SMa0981 0.79 -0.8 546,855 - +0.7 546,871 + -1.0 546,872 - +1.6 546,872 - +0.5 546,872 - +0.5 546,968 + -0.7 547,004 + +1.1 547,069 + +0.5 547,073 + SMa0983 0.11 +0.5 547,074 - SMa0983 0.11 -0.7 547,074 - SMa0983 0.11 -0.9 547,090 + SMa0983 0.15 -0.5 547,091 - SMa0983 0.16 +0.5 547,169 + SMa0983 0.37 -1.3 547,181 + SMa0983 0.40 -0.1 547,181 + SMa0983 0.40 -0.1 547,293 + SMa0983 0.70 +0.6 547,329 + SMa0983 0.80 +0.6 547,329 + SMa0983 0.80 +0.1 547,330 - SMa0983 0.80 +3.1 547,339 + SMa0983 0.82 -0.6 547,339 + SMa0983 0.82 +0.5 547,339 + SMa0983 0.82 -1.2 547,340 - SMa0983 0.83 -0.4 547,340 - SMa0983 0.83 +0.9 547,559 - +2.1 547,908 - SMa0985 0.45 +0.5 547,981 + SMa0985 0.54 -0.3 547,981 + SMa0985 0.54 -0.3 547,981 + SMa0985 0.54 -0.6 547,981 + SMa0985 0.54 -0.5 547,981 + SMa0985 0.54 -0.7 547,982 - SMa0985 0.54 +0.1 547,982 - SMa0985 0.54 -0.6 547,997 + SMa0985 0.56 -0.4 547,997 + SMa0985 0.56 -1.5 548,137 + SMa0985 0.72 +0.7 548,161 - SMa0985 0.75 -0.1 548,177 + SMa0985 0.77 +1.1 548,177 + SMa0985 0.77 -0.2 548,177 + SMa0985 0.77 -0.8 548,178 - SMa0985 0.77 +0.3 548,178 - SMa0985 0.77 -0.9 548,178 - SMa0985 0.77 +0.3 548,245 + SMa0985 0.85 -0.0 548,246 - SMa0985 0.85 -0.1 548,437 - SMa0988 0.14 -0.3 548,492 + SMa0988 0.32 -0.8 548,493 - SMa0988 0.33 +0.2 548,510 + SMa0988 0.38 -0.1 548,510 + SMa0988 0.38 +0.1 548,510 + SMa0988 0.38 +1.1 548,510 + SMa0988 0.38 +1.1 548,514 + SMa0988 0.40 -2.1 548,522 + SMa0988 0.43 -0.4 548,523 - SMa0988 0.43 -0.2 548,523 - +2.6 548,608 - SMa0988 0.72 +0.1 548,660 + SMa0988 0.89 +1.5 548,660 + SMa0988 0.89 +0.4 548,661 - -0.3 548,661 - +0.3 548,674 - -0.2 548,724 + -0.0 548,725 - +0.5 548,919 - +0.1 548,919 - +2.1 549,238 + +0.5 549,238 + -1.4 549,238 + +0.3 549,239 - +0.7 549,330 + -0.5 549,331 - +0.1 549,331 - -0.5 549,331 - +1.3
Or see this region's nucleotide sequence