Strain Fitness in Sinorhizobium meliloti 1021 around SMa0850

Experiment: 1-octen-3-ol 0.5427293333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0849 and SMa0850 are separated by 301 nucleotidesSMa0850 and SMa0851 are separated by 133 nucleotides SMa0849: SMa0849 - SyrM transcriptional regulator, at 466,418 to 467,398 SMa0849 SMa0850: SMa0850 - hypothetical protein, at 467,700 to 468,065 SMa0850 SMa0851: SMa0851 - NodH sulfotransferase, at 468,199 to 468,942 SMa0851 Position (kb) 467 468 469Strain fitness (log2 ratio) -2 -1 0 1 2at 466.723 kb on - strand, within SMa0849at 466.909 kb on - strand, within SMa0849at 467.176 kb on - strand, within SMa0849at 467.223 kb on + strand, within SMa0849at 467.303 kb on + strandat 467.434 kb on + strandat 467.434 kb on + strandat 467.435 kb on - strandat 467.464 kb on - strandat 467.648 kb on - strandat 467.655 kb on + strandat 467.733 kb on - strandat 467.754 kb on - strand, within SMa0850at 467.813 kb on + strand, within SMa0850at 467.814 kb on - strand, within SMa0850at 467.814 kb on - strand, within SMa0850at 467.814 kb on - strand, within SMa0850at 467.879 kb on + strand, within SMa0850at 467.879 kb on + strand, within SMa0850at 467.947 kb on + strand, within SMa0850at 468.044 kb on + strandat 468.133 kb on + strandat 468.230 kb on + strandat 468.621 kb on + strand, within SMa0851at 468.627 kb on + strand, within SMa0851at 468.627 kb on + strand, within SMa0851at 468.628 kb on - strand, within SMa0851at 468.793 kb on - strand, within SMa0851at 468.813 kb on - strand, within SMa0851at 468.960 kb on + strandat 468.990 kb on - strandat 469.012 kb on - strandat 469.012 kb on - strandat 469.034 kb on + strandat 469.049 kb on + strandat 469.049 kb on + strandat 469.050 kb on - strandat 469.055 kb on + strandat 469.055 kb on + strandat 469.056 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.5427293333 mM
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466,723 - SMa0849 0.31 -0.2
466,909 - SMa0849 0.50 +0.6
467,176 - SMa0849 0.77 +0.1
467,223 + SMa0849 0.82 -0.2
467,303 + -0.1
467,434 + +0.5
467,434 + +0.8
467,435 - +1.2
467,464 - +0.8
467,648 - +2.1
467,655 + -0.3
467,733 - +1.2
467,754 - SMa0850 0.15 -0.1
467,813 + SMa0850 0.31 +0.2
467,814 - SMa0850 0.31 +0.6
467,814 - SMa0850 0.31 -0.1
467,814 - SMa0850 0.31 -0.1
467,879 + SMa0850 0.49 +0.4
467,879 + SMa0850 0.49 -0.2
467,947 + SMa0850 0.67 +1.1
468,044 + +0.1
468,133 + +0.4
468,230 + -0.5
468,621 + SMa0851 0.57 +0.1
468,627 + SMa0851 0.58 +1.5
468,627 + SMa0851 0.58 -0.5
468,628 - SMa0851 0.58 +0.8
468,793 - SMa0851 0.80 -2.7
468,813 - SMa0851 0.83 -1.3
468,960 + +0.3
468,990 - +1.9
469,012 - -0.5
469,012 - -0.1
469,034 + -1.5
469,049 + +0.5
469,049 + +0.8
469,050 - +2.1
469,055 + +1.2
469,055 + +0.9
469,056 - +0.3

Or see this region's nucleotide sequence