Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21289

Experiment: 1-octen-3-ol 0.5427293333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21287 and SM_b21288 are separated by 26 nucleotidesSM_b21288 and SM_b21289 overlap by 11 nucleotidesSM_b21289 and SM_b21290 overlap by 11 nucleotidesSM_b21290 and SM_b21291 are separated by 11 nucleotides SM_b21287: SM_b21287 - xanthine dehydrogenase, at 862,359 to 864,692 _b21287 SM_b21288: SM_b21288 - xanthine dehydrogenase, at 864,719 to 865,585 _b21288 SM_b21289: SM_b21289 - protein, may interact with ubiquitin, at 865,575 to 866,078 _b21289 SM_b21290: SM_b21290 - NADPH quinone oxidoreductase, at 866,068 to 867,048 _b21290 SM_b21291: SM_b21291 - LysR family transcriptional regulator, at 867,060 to 868,007 _b21291 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1at 864.608 kb on + strandat 864.747 kb on + strandat 864.748 kb on - strandat 865.085 kb on + strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.344 kb on - strand, within SM_b21288at 865.357 kb on - strand, within SM_b21288at 865.357 kb on - strand, within SM_b21288at 865.357 kb on - strand, within SM_b21288at 865.510 kb on - strandat 865.583 kb on + strandat 865.583 kb on + strandat 865.583 kb on + strandat 865.744 kb on - strand, within SM_b21289at 865.767 kb on + strand, within SM_b21289at 865.767 kb on + strand, within SM_b21289at 865.880 kb on - strand, within SM_b21289at 865.953 kb on + strand, within SM_b21289at 865.953 kb on + strand, within SM_b21289at 865.954 kb on - strand, within SM_b21289at 865.985 kb on + strand, within SM_b21289at 865.986 kb on - strand, within SM_b21289at 865.993 kb on + strand, within SM_b21289at 866.005 kb on - strand, within SM_b21289at 866.005 kb on - strand, within SM_b21289at 866.005 kb on - strand, within SM_b21289at 866.023 kb on - strand, within SM_b21289at 866.023 kb on - strand, within SM_b21289at 866.067 kb on + strandat 866.067 kb on + strandat 866.068 kb on - strandat 866.130 kb on + strandat 866.189 kb on - strand, within SM_b21290at 866.189 kb on - strand, within SM_b21290at 866.277 kb on - strand, within SM_b21290at 866.363 kb on - strand, within SM_b21290at 866.371 kb on + strand, within SM_b21290at 866.372 kb on - strand, within SM_b21290at 866.375 kb on + strand, within SM_b21290at 866.375 kb on + strand, within SM_b21290at 866.376 kb on - strand, within SM_b21290at 866.399 kb on + strand, within SM_b21290at 866.650 kb on + strand, within SM_b21290at 866.651 kb on - strand, within SM_b21290at 866.651 kb on - strand, within SM_b21290at 866.651 kb on - strand, within SM_b21290at 866.651 kb on - strand, within SM_b21290at 866.718 kb on - strand, within SM_b21290at 866.825 kb on + strand, within SM_b21290at 866.870 kb on + strand, within SM_b21290at 867.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.5427293333 mM
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864,608 + -0.6
864,747 + +0.7
864,748 - -0.6
865,085 + SM_b21288 0.42 -2.3
865,086 - SM_b21288 0.42 -0.5
865,086 - SM_b21288 0.42 +0.1
865,086 - SM_b21288 0.42 +0.5
865,086 - SM_b21288 0.42 -0.2
865,086 - SM_b21288 0.42 -0.3
865,344 - SM_b21288 0.72 +0.1
865,357 - SM_b21288 0.74 +0.7
865,357 - SM_b21288 0.74 -0.2
865,357 - SM_b21288 0.74 +0.4
865,510 - -0.7
865,583 + +0.0
865,583 + -0.4
865,583 + -0.6
865,744 - SM_b21289 0.34 +0.7
865,767 + SM_b21289 0.38 +0.5
865,767 + SM_b21289 0.38 +0.1
865,880 - SM_b21289 0.61 +0.2
865,953 + SM_b21289 0.75 +0.7
865,953 + SM_b21289 0.75 +0.2
865,954 - SM_b21289 0.75 +0.4
865,985 + SM_b21289 0.81 +0.5
865,986 - SM_b21289 0.82 +1.2
865,993 + SM_b21289 0.83 -1.1
866,005 - SM_b21289 0.85 -0.1
866,005 - SM_b21289 0.85 +0.7
866,005 - SM_b21289 0.85 +0.8
866,023 - SM_b21289 0.89 -0.6
866,023 - SM_b21289 0.89 -2.0
866,067 + -0.4
866,067 + +0.8
866,068 - +0.5
866,130 + +0.5
866,189 - SM_b21290 0.12 -0.7
866,189 - SM_b21290 0.12 -0.1
866,277 - SM_b21290 0.21 -0.5
866,363 - SM_b21290 0.30 -0.2
866,371 + SM_b21290 0.31 +0.3
866,372 - SM_b21290 0.31 +0.4
866,375 + SM_b21290 0.31 +0.7
866,375 + SM_b21290 0.31 +0.7
866,376 - SM_b21290 0.31 +0.1
866,399 + SM_b21290 0.34 -0.0
866,650 + SM_b21290 0.59 -0.4
866,651 - SM_b21290 0.59 -0.6
866,651 - SM_b21290 0.59 -0.6
866,651 - SM_b21290 0.59 -0.2
866,651 - SM_b21290 0.59 +0.3
866,718 - SM_b21290 0.66 -0.8
866,825 + SM_b21290 0.77 -0.6
866,870 + SM_b21290 0.82 +0.2
867,028 - +0.6

Or see this region's nucleotide sequence