Strain Fitness in Sinorhizobium meliloti 1021 around SMc03930

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03929 and SMc03930 are separated by 195 nucleotidesSMc03930 and SMc03931 overlap by 8 nucleotides SMc03929: SMc03929 - zinc-type alcohol dehydrogenase transmembrane protein, at 3,078,322 to 3,079,497 SMc03929 SMc03930: SMc03930 - sarcosine oxidase subunit gamma, at 3,079,693 to 3,080,247 SMc03930 SMc03931: SMc03931 - sarcosine oxidase subunit alpha, at 3,080,240 to 3,083,233 SMc03931 Position (kb) 3079 3080 3081Strain fitness (log2 ratio) -1 0 1at 3078.787 kb on - strand, within SMc03929at 3078.886 kb on - strand, within SMc03929at 3079.077 kb on + strand, within SMc03929at 3079.078 kb on - strand, within SMc03929at 3079.078 kb on - strand, within SMc03929at 3079.078 kb on - strand, within SMc03929at 3079.390 kb on - strandat 3079.397 kb on + strandat 3079.398 kb on - strandat 3079.398 kb on - strandat 3079.590 kb on + strandat 3079.590 kb on + strandat 3079.590 kb on + strandat 3079.593 kb on + strandat 3079.593 kb on + strandat 3079.776 kb on + strand, within SMc03930at 3080.325 kb on + strandat 3080.326 kb on - strandat 3080.326 kb on - strandat 3080.326 kb on - strandat 3080.403 kb on + strandat 3080.403 kb on + strandat 3080.641 kb on + strand, within SMc03931at 3080.662 kb on - strand, within SMc03931at 3080.864 kb on - strand, within SMc03931at 3081.012 kb on + strand, within SMc03931at 3081.012 kb on + strand, within SMc03931at 3081.012 kb on + strand, within SMc03931at 3081.013 kb on - strand, within SMc03931at 3081.183 kb on + strand, within SMc03931at 3081.183 kb on + strand, within SMc03931at 3081.183 kb on + strand, within SMc03931at 3081.184 kb on - strand, within SMc03931at 3081.184 kb on - strand, within SMc03931at 3081.184 kb on - strand, within SMc03931

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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3,078,787 - SMc03929 0.40 +0.6
3,078,886 - SMc03929 0.48 -0.4
3,079,077 + SMc03929 0.64 -0.1
3,079,078 - SMc03929 0.64 +0.2
3,079,078 - SMc03929 0.64 -0.0
3,079,078 - SMc03929 0.64 -0.0
3,079,390 - -0.0
3,079,397 + +0.5
3,079,398 - +0.6
3,079,398 - +0.4
3,079,590 + +0.5
3,079,590 + -0.4
3,079,590 + -0.1
3,079,593 + -0.3
3,079,593 + +0.1
3,079,776 + SMc03930 0.15 -1.4
3,080,325 + -0.6
3,080,326 - -0.9
3,080,326 - -0.5
3,080,326 - -0.5
3,080,403 + -0.3
3,080,403 + -0.9
3,080,641 + SMc03931 0.13 +0.8
3,080,662 - SMc03931 0.14 -0.1
3,080,864 - SMc03931 0.21 -0.1
3,081,012 + SMc03931 0.26 -0.4
3,081,012 + SMc03931 0.26 +0.6
3,081,012 + SMc03931 0.26 +0.1
3,081,013 - SMc03931 0.26 +0.4
3,081,183 + SMc03931 0.31 -0.0
3,081,183 + SMc03931 0.31 +0.4
3,081,183 + SMc03931 0.31 -1.3
3,081,184 - SMc03931 0.32 -0.1
3,081,184 - SMc03931 0.32 -0.3
3,081,184 - SMc03931 0.32 +0.1

Or see this region's nucleotide sequence