Strain Fitness in Sinorhizobium meliloti 1021 around SMc02691

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02690 and SMc02691 are separated by 273 nucleotidesSMc02691 and SMc02692 are separated by 167 nucleotides SMc02690: SMc02690 - hypothetical protein, at 2,539,659 to 2,540,615 SMc02690 SMc02691: SMc02691 - membrane transporter, at 2,540,889 to 2,542,121 SMc02691 SMc02692: SMc02692 - 50S ribosomal protein L25, at 2,542,289 to 2,542,903 SMc02692 Position (kb) 2540 2541 2542 2543Strain fitness (log2 ratio) -1 0 1at 2540.097 kb on + strand, within SMc02690at 2540.098 kb on - strand, within SMc02690at 2540.160 kb on - strand, within SMc02690at 2540.348 kb on + strand, within SMc02690at 2540.348 kb on + strand, within SMc02690at 2540.581 kb on + strandat 2540.582 kb on - strandat 2540.764 kb on + strandat 2540.765 kb on - strandat 2540.778 kb on - strandat 2540.782 kb on - strandat 2540.782 kb on - strandat 2540.782 kb on - strandat 2540.782 kb on - strandat 2540.783 kb on + strandat 2540.783 kb on + strandat 2540.784 kb on - strandat 2540.784 kb on - strandat 2540.784 kb on - strandat 2540.817 kb on - strandat 2540.858 kb on - strandat 2540.893 kb on + strandat 2540.894 kb on - strandat 2540.894 kb on - strandat 2540.894 kb on - strandat 2540.894 kb on - strandat 2540.894 kb on - strandat 2540.905 kb on + strandat 2540.906 kb on - strandat 2541.442 kb on - strand, within SMc02691at 2541.493 kb on + strand, within SMc02691at 2541.493 kb on + strand, within SMc02691at 2541.494 kb on - strand, within SMc02691at 2541.666 kb on + strand, within SMc02691at 2541.667 kb on - strand, within SMc02691at 2541.667 kb on - strand, within SMc02691at 2541.844 kb on - strand, within SMc02691at 2541.844 kb on - strand, within SMc02691at 2542.112 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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2,540,097 + SMc02690 0.46 +0.6
2,540,098 - SMc02690 0.46 +0.7
2,540,160 - SMc02690 0.52 -0.0
2,540,348 + SMc02690 0.72 -0.4
2,540,348 + SMc02690 0.72 +0.2
2,540,581 + -0.2
2,540,582 - -0.2
2,540,764 + +0.6
2,540,765 - -0.4
2,540,778 - +0.2
2,540,782 - -0.5
2,540,782 - +0.5
2,540,782 - -0.6
2,540,782 - +1.5
2,540,783 + +0.8
2,540,783 + +0.1
2,540,784 - +0.2
2,540,784 - +0.2
2,540,784 - +0.3
2,540,817 - +0.4
2,540,858 - -0.2
2,540,893 + -0.5
2,540,894 - +0.4
2,540,894 - +0.8
2,540,894 - -0.3
2,540,894 - +0.2
2,540,894 - -0.6
2,540,905 + -0.3
2,540,906 - +0.6
2,541,442 - SMc02691 0.45 -0.2
2,541,493 + SMc02691 0.49 -0.3
2,541,493 + SMc02691 0.49 -0.2
2,541,494 - SMc02691 0.49 -1.3
2,541,666 + SMc02691 0.63 -0.6
2,541,667 - SMc02691 0.63 -0.9
2,541,667 - SMc02691 0.63 -0.6
2,541,844 - SMc02691 0.77 -0.6
2,541,844 - SMc02691 0.77 -0.6
2,542,112 + +0.5

Or see this region's nucleotide sequence