Strain Fitness in Sinorhizobium meliloti 1021 around SMc02426

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02424 and SMc02425 are separated by 80 nucleotidesSMc02425 and SMc02426 are separated by 134 nucleotidesSMc02426 and SMc02427 are separated by 31 nucleotidesSMc02427 and SMc02428 are separated by 56 nucleotides SMc02424: SMc02424 - oligopeptide transport ATP-binding ABC transporter protein, at 2,796,470 to 2,797,474 SMc02424 SMc02425: SMc02425 - transcriptional regulator, at 2,797,555 to 2,798,232 SMc02425 SMc02426: SMc02426 - hypothetical protein, at 2,798,367 to 2,798,993 SMc02426 SMc02427: SMc02427 - hydantoin racemase, at 2,799,025 to 2,799,750 SMc02427 SMc02428: SMc02428 - oxidoreductase, at 2,799,807 to 2,801,327 SMc02428 Position (kb) 2798 2799Strain fitness (log2 ratio) -1 0 1 2 3at 2797.446 kb on + strandat 2797.482 kb on + strandat 2797.482 kb on + strandat 2797.483 kb on - strandat 2797.483 kb on - strandat 2797.527 kb on + strandat 2797.527 kb on + strandat 2797.527 kb on + strandat 2797.527 kb on + strandat 2797.527 kb on + strandat 2797.594 kb on + strandat 2797.595 kb on - strandat 2797.651 kb on + strand, within SMc02425at 2797.770 kb on + strand, within SMc02425at 2797.854 kb on + strand, within SMc02425at 2797.860 kb on + strand, within SMc02425at 2798.477 kb on + strand, within SMc02426at 2798.477 kb on + strand, within SMc02426at 2798.478 kb on - strand, within SMc02426at 2798.794 kb on - strand, within SMc02426at 2798.824 kb on + strand, within SMc02426at 2798.872 kb on - strand, within SMc02426at 2798.872 kb on - strand, within SMc02426at 2798.922 kb on + strand, within SMc02426at 2798.922 kb on + strand, within SMc02426at 2798.923 kb on - strand, within SMc02426at 2798.923 kb on - strand, within SMc02426at 2798.923 kb on - strand, within SMc02426at 2798.923 kb on - strand, within SMc02426at 2798.923 kb on - strand, within SMc02426at 2798.991 kb on + strandat 2799.030 kb on + strandat 2799.030 kb on + strandat 2799.031 kb on - strandat 2799.031 kb on - strandat 2799.238 kb on + strand, within SMc02427at 2799.238 kb on + strand, within SMc02427at 2799.238 kb on + strand, within SMc02427at 2799.245 kb on + strand, within SMc02427at 2799.246 kb on - strand, within SMc02427at 2799.246 kb on - strand, within SMc02427at 2799.327 kb on - strand, within SMc02427at 2799.365 kb on + strand, within SMc02427at 2799.365 kb on + strand, within SMc02427at 2799.443 kb on + strand, within SMc02427at 2799.444 kb on - strand, within SMc02427at 2799.503 kb on + strand, within SMc02427at 2799.585 kb on - strand, within SMc02427at 2799.644 kb on + strand, within SMc02427at 2799.644 kb on + strand, within SMc02427at 2799.645 kb on - strand, within SMc02427at 2799.676 kb on + strand, within SMc02427at 2799.700 kb on + strandat 2799.700 kb on + strandat 2799.700 kb on + strandat 2799.700 kb on + strandat 2799.701 kb on - strandat 2799.701 kb on - strandat 2799.701 kb on - strandat 2799.773 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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2,797,446 + -0.4
2,797,482 + -0.4
2,797,482 + +0.2
2,797,483 - +0.0
2,797,483 - +0.3
2,797,527 + +0.1
2,797,527 + +2.0
2,797,527 + -0.4
2,797,527 + -0.0
2,797,527 + -0.3
2,797,594 + +1.0
2,797,595 - -1.2
2,797,651 + SMc02425 0.14 -0.6
2,797,770 + SMc02425 0.32 +3.0
2,797,854 + SMc02425 0.44 -0.5
2,797,860 + SMc02425 0.45 -0.6
2,798,477 + SMc02426 0.18 +0.4
2,798,477 + SMc02426 0.18 -0.2
2,798,478 - SMc02426 0.18 -1.2
2,798,794 - SMc02426 0.68 +0.6
2,798,824 + SMc02426 0.73 +0.4
2,798,872 - SMc02426 0.81 -0.3
2,798,872 - SMc02426 0.81 +0.0
2,798,922 + SMc02426 0.89 +1.4
2,798,922 + SMc02426 0.89 -0.5
2,798,923 - SMc02426 0.89 +0.7
2,798,923 - SMc02426 0.89 +0.2
2,798,923 - SMc02426 0.89 +0.8
2,798,923 - SMc02426 0.89 +1.0
2,798,923 - SMc02426 0.89 +1.6
2,798,991 + +0.6
2,799,030 + -1.0
2,799,030 + +0.9
2,799,031 - -0.2
2,799,031 - -0.1
2,799,238 + SMc02427 0.29 +0.8
2,799,238 + SMc02427 0.29 -0.4
2,799,238 + SMc02427 0.29 +0.2
2,799,245 + SMc02427 0.30 -0.8
2,799,246 - SMc02427 0.30 +0.1
2,799,246 - SMc02427 0.30 -0.1
2,799,327 - SMc02427 0.42 -1.4
2,799,365 + SMc02427 0.47 +1.0
2,799,365 + SMc02427 0.47 +0.4
2,799,443 + SMc02427 0.58 +1.0
2,799,444 - SMc02427 0.58 -0.1
2,799,503 + SMc02427 0.66 +0.4
2,799,585 - SMc02427 0.77 -0.3
2,799,644 + SMc02427 0.85 +0.4
2,799,644 + SMc02427 0.85 -0.4
2,799,645 - SMc02427 0.85 +0.3
2,799,676 + SMc02427 0.90 -0.3
2,799,700 + +0.2
2,799,700 + +0.3
2,799,700 + +0.3
2,799,700 + +0.8
2,799,701 - +0.8
2,799,701 - -1.0
2,799,701 - +1.0
2,799,773 + +0.3

Or see this region's nucleotide sequence