Strain Fitness in Sinorhizobium meliloti 1021 around SMa2251

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2249 and SMa2251 overlap by 4 nucleotidesSMa2251 and SMa2253 are separated by 957 nucleotides SMa2249: SMa2249 - hypothetical protein, at 1,260,671 to 1,261,777 SMa2249 SMa2251: SMa2251 - hypothetical protein, at 1,261,774 to 1,262,337 SMa2251 SMa2253: SMa2253 - hypothetical protein, at 1,263,295 to 1,263,672 SMa2253 Position (kb) 1261 1262 1263Strain fitness (log2 ratio) -1 0 1 2at 1261.029 kb on + strand, within SMa2249at 1261.073 kb on + strand, within SMa2249at 1261.124 kb on + strand, within SMa2249at 1261.238 kb on - strand, within SMa2249at 1261.238 kb on - strand, within SMa2249at 1261.414 kb on + strand, within SMa2249at 1261.547 kb on + strand, within SMa2249at 1261.548 kb on - strand, within SMa2249at 1261.548 kb on - strand, within SMa2249at 1261.548 kb on - strand, within SMa2249at 1261.638 kb on + strand, within SMa2249at 1261.639 kb on - strand, within SMa2249at 1261.924 kb on + strand, within SMa2251at 1261.925 kb on - strand, within SMa2251at 1262.000 kb on + strand, within SMa2251at 1262.021 kb on - strand, within SMa2251at 1262.097 kb on + strand, within SMa2251at 1262.130 kb on + strand, within SMa2251at 1262.130 kb on + strand, within SMa2251at 1262.130 kb on + strand, within SMa2251at 1262.174 kb on + strand, within SMa2251at 1262.252 kb on - strand, within SMa2251at 1262.335 kb on + strandat 1262.972 kb on + strandat 1262.972 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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1,261,029 + SMa2249 0.32 -0.1
1,261,073 + SMa2249 0.36 -0.3
1,261,124 + SMa2249 0.41 +0.9
1,261,238 - SMa2249 0.51 +0.2
1,261,238 - SMa2249 0.51 -0.6
1,261,414 + SMa2249 0.67 -0.8
1,261,547 + SMa2249 0.79 -0.4
1,261,548 - SMa2249 0.79 +0.4
1,261,548 - SMa2249 0.79 -0.3
1,261,548 - SMa2249 0.79 -1.2
1,261,638 + SMa2249 0.87 -0.2
1,261,639 - SMa2249 0.87 -0.4
1,261,924 + SMa2251 0.27 -0.8
1,261,925 - SMa2251 0.27 +1.3
1,262,000 + SMa2251 0.40 +1.4
1,262,021 - SMa2251 0.44 -0.4
1,262,097 + SMa2251 0.57 +0.4
1,262,130 + SMa2251 0.63 +1.3
1,262,130 + SMa2251 0.63 +1.0
1,262,130 + SMa2251 0.63 +1.0
1,262,174 + SMa2251 0.71 -0.5
1,262,252 - SMa2251 0.85 +2.6
1,262,335 + +0.7
1,262,972 + -0.7
1,262,972 + -0.3

Or see this region's nucleotide sequence