Experiment: 1-octen-3-ol 0.6030326667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1547 and SMa1548 are separated by 141 nucleotides SMa1548 and SMa1550 are separated by 190 nucleotides
SMa1547: SMa1547 - protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT), at 853,409 to 854,080
SMa1547
SMa1548: SMa1548 - Diguanylate cyclase/phosphodiesterase, at 854,222 to 857,437
SMa1548
SMa1550: SMa1550 - Response regulator, at 857,628 to 858,311
SMa1550
Position (kb) 854
855
856
857
858 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.277 kb on + strand at 853.278 kb on - strand at 853.278 kb on - strand at 853.337 kb on + strand at 853.338 kb on - strand at 853.338 kb on - strand at 853.359 kb on - strand at 853.476 kb on - strand at 853.624 kb on + strand, within SMa1547 at 853.828 kb on + strand, within SMa1547 at 853.828 kb on + strand, within SMa1547 at 853.828 kb on + strand, within SMa1547 at 853.828 kb on + strand, within SMa1547 at 853.829 kb on - strand, within SMa1547 at 853.829 kb on - strand, within SMa1547 at 853.829 kb on - strand, within SMa1547 at 854.078 kb on + strand at 854.078 kb on + strand at 854.111 kb on + strand at 854.111 kb on + strand at 854.111 kb on + strand at 854.111 kb on + strand at 854.111 kb on + strand at 854.112 kb on - strand at 854.112 kb on - strand at 854.112 kb on - strand at 854.112 kb on - strand at 854.112 kb on - strand at 854.115 kb on + strand at 854.116 kb on - strand at 854.168 kb on + strand at 854.210 kb on - strand at 854.254 kb on + strand at 854.254 kb on + strand at 854.254 kb on + strand at 854.254 kb on + strand at 854.254 kb on + strand at 854.254 kb on + strand at 854.255 kb on - strand at 854.281 kb on + strand at 854.281 kb on + strand at 854.281 kb on + strand at 854.309 kb on - strand at 854.309 kb on - strand at 854.409 kb on + strand at 854.409 kb on + strand at 854.409 kb on + strand at 854.410 kb on - strand at 854.410 kb on - strand at 854.410 kb on - strand at 854.410 kb on - strand at 854.457 kb on + strand at 854.458 kb on - strand at 854.603 kb on - strand, within SMa1548 at 854.654 kb on + strand, within SMa1548 at 854.873 kb on + strand, within SMa1548 at 854.874 kb on - strand, within SMa1548 at 854.874 kb on - strand, within SMa1548 at 854.903 kb on - strand, within SMa1548 at 854.982 kb on + strand, within SMa1548 at 855.104 kb on - strand, within SMa1548 at 855.104 kb on - strand, within SMa1548 at 855.500 kb on - strand, within SMa1548 at 855.500 kb on - strand, within SMa1548 at 855.839 kb on - strand, within SMa1548 at 855.876 kb on - strand, within SMa1548 at 856.108 kb on - strand, within SMa1548 at 856.165 kb on + strand, within SMa1548 at 856.166 kb on - strand, within SMa1548 at 856.258 kb on + strand, within SMa1548 at 856.259 kb on - strand, within SMa1548 at 856.422 kb on + strand, within SMa1548 at 856.423 kb on - strand, within SMa1548 at 856.608 kb on - strand, within SMa1548 at 856.637 kb on + strand, within SMa1548 at 856.637 kb on + strand, within SMa1548 at 856.637 kb on + strand, within SMa1548 at 856.637 kb on + strand, within SMa1548 at 856.638 kb on - strand, within SMa1548 at 856.638 kb on - strand, within SMa1548 at 857.084 kb on - strand, within SMa1548 at 857.097 kb on + strand, within SMa1548 at 857.153 kb on + strand at 857.373 kb on - strand at 857.435 kb on + strand at 857.435 kb on + strand at 857.436 kb on - strand at 857.472 kb on - strand at 857.472 kb on - strand at 857.478 kb on - strand at 857.563 kb on + strand at 857.622 kb on - strand at 857.627 kb on - strand at 857.651 kb on + strand at 857.652 kb on - strand at 857.718 kb on - strand, within SMa1550 at 857.726 kb on + strand, within SMa1550 at 857.940 kb on + strand, within SMa1550 at 857.941 kb on - strand, within SMa1550 at 858.009 kb on + strand, within SMa1550 at 858.098 kb on + strand, within SMa1550 at 858.099 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.149 kb on - strand, within SMa1550 at 858.226 kb on + strand, within SMa1550 at 858.226 kb on + strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.227 kb on - strand, within SMa1550 at 858.309 kb on + strand at 858.309 kb on + strand at 858.310 kb on - strand at 858.322 kb on + strand at 858.334 kb on + strand at 858.352 kb on - strand at 858.375 kb on - strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.395 kb on + strand at 858.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM remove 853,277 + +0.4 853,278 - +0.1 853,278 - +0.2 853,337 + -1.5 853,338 - +0.3 853,338 - +0.2 853,359 - +1.0 853,476 - -1.2 853,624 + SMa1547 0.32 -0.7 853,828 + SMa1547 0.62 -0.0 853,828 + SMa1547 0.62 -0.7 853,828 + SMa1547 0.62 -0.7 853,828 + SMa1547 0.62 -0.2 853,829 - SMa1547 0.62 +1.3 853,829 - SMa1547 0.62 +1.0 853,829 - SMa1547 0.62 +0.5 854,078 + -0.9 854,078 + -0.8 854,111 + -0.1 854,111 + -0.2 854,111 + -0.2 854,111 + +0.6 854,111 + +0.5 854,112 - +0.1 854,112 - +2.0 854,112 - +0.8 854,112 - -0.5 854,112 - +0.3 854,115 + -1.7 854,116 - +0.9 854,168 + -0.6 854,210 - +0.2 854,254 + +0.2 854,254 + +1.5 854,254 + +0.1 854,254 + -0.0 854,254 + +0.3 854,254 + -0.3 854,255 - -0.2 854,281 + +0.3 854,281 + -0.2 854,281 + +0.8 854,309 - -0.2 854,309 - -1.0 854,409 + +2.6 854,409 + +0.5 854,409 + -0.3 854,410 - -0.6 854,410 - +1.0 854,410 - +0.3 854,410 - +0.3 854,457 + +0.1 854,458 - -0.0 854,603 - SMa1548 0.12 +0.2 854,654 + SMa1548 0.13 +0.6 854,873 + SMa1548 0.20 +0.4 854,874 - SMa1548 0.20 +0.4 854,874 - SMa1548 0.20 +0.7 854,903 - SMa1548 0.21 +0.1 854,982 + SMa1548 0.24 +0.7 855,104 - SMa1548 0.27 -0.0 855,104 - SMa1548 0.27 -0.2 855,500 - SMa1548 0.40 +0.7 855,500 - SMa1548 0.40 -0.2 855,839 - SMa1548 0.50 -1.8 855,876 - SMa1548 0.51 -0.4 856,108 - SMa1548 0.59 +0.3 856,165 + SMa1548 0.60 +0.1 856,166 - SMa1548 0.60 -0.1 856,258 + SMa1548 0.63 -0.0 856,259 - SMa1548 0.63 +0.0 856,422 + SMa1548 0.68 +1.4 856,423 - SMa1548 0.68 +0.7 856,608 - SMa1548 0.74 -0.2 856,637 + SMa1548 0.75 +0.5 856,637 + SMa1548 0.75 -0.5 856,637 + SMa1548 0.75 +0.6 856,637 + SMa1548 0.75 +0.8 856,638 - SMa1548 0.75 +0.1 856,638 - SMa1548 0.75 +2.7 857,084 - SMa1548 0.89 +0.0 857,097 + SMa1548 0.89 -0.1 857,153 + +0.4 857,373 - -0.6 857,435 + +0.3 857,435 + -0.3 857,436 - +0.1 857,472 - +0.0 857,472 - -0.5 857,478 - +1.6 857,563 + -0.0 857,622 - -0.7 857,627 - -0.0 857,651 + -0.7 857,652 - +0.3 857,718 - SMa1550 0.13 +0.2 857,726 + SMa1550 0.14 -0.3 857,940 + SMa1550 0.46 +0.8 857,941 - SMa1550 0.46 -0.5 858,009 + SMa1550 0.56 -1.1 858,098 + SMa1550 0.69 +0.2 858,099 - SMa1550 0.69 +0.5 858,149 - SMa1550 0.76 +0.4 858,149 - SMa1550 0.76 -0.6 858,149 - SMa1550 0.76 +1.4 858,149 - SMa1550 0.76 -0.4 858,226 + SMa1550 0.87 -0.0 858,226 + SMa1550 0.87 -0.3 858,227 - SMa1550 0.88 +0.6 858,227 - SMa1550 0.88 +0.1 858,227 - SMa1550 0.88 -0.4 858,309 + +0.1 858,309 + +0.2 858,310 - +0.5 858,322 + -0.3 858,334 + -0.8 858,352 - -1.6 858,375 - +0.3 858,395 + -0.0 858,395 + -0.1 858,395 + -0.1 858,395 + -0.0 858,396 - +0.1
Or see this region's nucleotide sequence