Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20138

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20137 and SM_b20138 are separated by 39 nucleotidesSM_b20138 and SM_b20139 are separated by 311 nucleotidesSM_b20139 and SM_b20140 are separated by 19 nucleotides SM_b20137: SM_b20137 - hypothetical protein, at 151,195 to 152,136 _b20137 SM_b20138: SM_b20138 - hypothetical protein, at 152,176 to 153,102 _b20138 SM_b20139: SM_b20139 - hypothetical protein, at 153,414 to 153,908 _b20139 SM_b20140: SM_b20140 - dihydrodipicolinate synthase, at 153,928 to 154,809 _b20140 Position (kb) 152 153 154Strain fitness (log2 ratio) -2 -1 0 1 2at 151.206 kb on + strandat 151.207 kb on - strandat 151.238 kb on + strandat 151.238 kb on + strandat 151.239 kb on - strandat 151.242 kb on + strandat 151.518 kb on - strand, within SM_b20137at 151.562 kb on + strand, within SM_b20137at 151.655 kb on + strand, within SM_b20137at 151.655 kb on + strand, within SM_b20137at 151.655 kb on + strand, within SM_b20137at 151.655 kb on + strand, within SM_b20137at 151.655 kb on + strandat 151.656 kb on - strand, within SM_b20137at 151.656 kb on - strand, within SM_b20137at 151.853 kb on + strand, within SM_b20137at 151.853 kb on + strand, within SM_b20137at 151.907 kb on + strand, within SM_b20137at 151.908 kb on - strand, within SM_b20137at 151.908 kb on - strand, within SM_b20137at 151.916 kb on + strand, within SM_b20137at 151.965 kb on + strand, within SM_b20137at 152.025 kb on + strand, within SM_b20137at 152.026 kb on - strand, within SM_b20137at 152.027 kb on + strand, within SM_b20137at 152.027 kb on + strand, within SM_b20137at 152.027 kb on + strand, within SM_b20137at 152.027 kb on + strand, within SM_b20137at 152.027 kb on + strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.028 kb on - strand, within SM_b20137at 152.139 kb on + strandat 152.139 kb on + strandat 152.140 kb on - strandat 152.140 kb on - strandat 152.291 kb on + strand, within SM_b20138at 152.291 kb on + strand, within SM_b20138at 152.292 kb on - strand, within SM_b20138at 152.478 kb on - strand, within SM_b20138at 152.478 kb on - strand, within SM_b20138at 152.523 kb on - strand, within SM_b20138at 152.616 kb on - strand, within SM_b20138at 152.616 kb on - strand, within SM_b20138at 152.711 kb on + strand, within SM_b20138at 152.754 kb on - strand, within SM_b20138at 152.802 kb on - strand, within SM_b20138at 152.802 kb on - strand, within SM_b20138at 152.813 kb on + strandat 152.876 kb on + strand, within SM_b20138at 152.876 kb on + strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.877 kb on - strand, within SM_b20138at 152.924 kb on + strand, within SM_b20138at 152.925 kb on - strand, within SM_b20138at 152.925 kb on - strand, within SM_b20138at 152.925 kb on - strand, within SM_b20138at 152.990 kb on + strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.991 kb on - strand, within SM_b20138at 152.993 kb on + strand, within SM_b20138at 152.994 kb on - strand, within SM_b20138at 152.994 kb on - strand, within SM_b20138at 152.994 kb on - strand, within SM_b20138at 153.087 kb on + strandat 153.258 kb on + strandat 153.268 kb on + strandat 153.268 kb on + strandat 153.271 kb on + strandat 153.272 kb on - strandat 153.290 kb on + strandat 153.290 kb on + strandat 153.291 kb on - strandat 153.587 kb on + strand, within SM_b20139at 153.588 kb on - strand, within SM_b20139at 153.588 kb on - strand, within SM_b20139at 153.588 kb on - strand, within SM_b20139at 153.698 kb on + strand, within SM_b20139at 153.887 kb on + strandat 154.100 kb on + strand, within SM_b20140at 154.101 kb on - strand, within SM_b20140

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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151,206 + -0.6
151,207 - -0.3
151,238 + -0.3
151,238 + -0.4
151,239 - -0.1
151,242 + +0.9
151,518 - SM_b20137 0.34 -1.0
151,562 + SM_b20137 0.39 -0.2
151,655 + SM_b20137 0.49 -0.2
151,655 + SM_b20137 0.49 +0.3
151,655 + SM_b20137 0.49 -0.9
151,655 + SM_b20137 0.49 +0.5
151,655 + +0.6
151,656 - SM_b20137 0.49 +0.2
151,656 - SM_b20137 0.49 -0.1
151,853 + SM_b20137 0.70 +0.4
151,853 + SM_b20137 0.70 -0.6
151,907 + SM_b20137 0.76 +0.4
151,908 - SM_b20137 0.76 +0.1
151,908 - SM_b20137 0.76 -0.3
151,916 + SM_b20137 0.77 -0.1
151,965 + SM_b20137 0.82 +0.2
152,025 + SM_b20137 0.88 -0.0
152,026 - SM_b20137 0.88 +0.5
152,027 + SM_b20137 0.88 -0.3
152,027 + SM_b20137 0.88 -0.1
152,027 + SM_b20137 0.88 +0.3
152,027 + SM_b20137 0.88 +1.1
152,027 + SM_b20137 0.88 +0.3
152,028 - SM_b20137 0.88 -0.2
152,028 - SM_b20137 0.88 -0.8
152,028 - SM_b20137 0.88 +0.0
152,028 - SM_b20137 0.88 +0.6
152,028 - SM_b20137 0.88 +1.9
152,028 - SM_b20137 0.88 -0.1
152,139 + -0.0
152,139 + +0.3
152,140 - -0.5
152,140 - -1.1
152,291 + SM_b20138 0.12 -0.2
152,291 + SM_b20138 0.12 -0.1
152,292 - SM_b20138 0.13 -0.1
152,478 - SM_b20138 0.33 -0.4
152,478 - SM_b20138 0.33 -0.5
152,523 - SM_b20138 0.37 +0.9
152,616 - SM_b20138 0.47 -0.4
152,616 - SM_b20138 0.47 -1.3
152,711 + SM_b20138 0.58 -0.2
152,754 - SM_b20138 0.62 +0.1
152,802 - SM_b20138 0.68 -0.1
152,802 - SM_b20138 0.68 -0.4
152,813 + +0.1
152,876 + SM_b20138 0.76 -0.2
152,876 + SM_b20138 0.76 -0.0
152,877 - SM_b20138 0.76 -0.3
152,877 - SM_b20138 0.76 -1.2
152,877 - SM_b20138 0.76 +0.3
152,877 - SM_b20138 0.76 -0.7
152,924 + SM_b20138 0.81 -0.5
152,925 - SM_b20138 0.81 +0.1
152,925 - SM_b20138 0.81 -0.9
152,925 - SM_b20138 0.81 +0.0
152,990 + SM_b20138 0.88 -1.1
152,991 - SM_b20138 0.88 -0.9
152,991 - SM_b20138 0.88 +0.3
152,991 - SM_b20138 0.88 -1.9
152,991 - SM_b20138 0.88 -1.9
152,993 + SM_b20138 0.88 -0.4
152,994 - SM_b20138 0.88 +1.3
152,994 - SM_b20138 0.88 +0.3
152,994 - SM_b20138 0.88 +0.0
153,087 + -0.6
153,258 + +0.6
153,268 + +1.5
153,268 + -0.6
153,271 + +0.0
153,272 - -0.4
153,290 + -1.6
153,290 + +0.5
153,291 - -0.2
153,587 + SM_b20139 0.35 -1.1
153,588 - SM_b20139 0.35 +0.1
153,588 - SM_b20139 0.35 -0.1
153,588 - SM_b20139 0.35 -0.1
153,698 + SM_b20139 0.57 +0.4
153,887 + +0.6
154,100 + SM_b20140 0.20 -0.1
154,101 - SM_b20140 0.20 +0.3

Or see this region's nucleotide sequence