Strain Fitness in Sinorhizobium meliloti 1021 around SMc04018

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04016 and SMc04017 are separated by 310 nucleotidesSMc04017 and SMc04018 are separated by 305 nucleotidesSMc04018 and SMc04019 are separated by 119 nucleotides SMc04016: SMc04016 - homospermidine synthase, at 3,012,431 to 3,013,882 SMc04016 SMc04017: SMc04017 - outer membrane lipoprotein, at 3,014,193 to 3,014,561 SMc04017 SMc04018: SMc04018 - 5'-nucleotidase, at 3,014,867 to 3,016,753 SMc04018 SMc04019: SMc04019 - ferrochelatase, at 3,016,873 to 3,017,901 SMc04019 Position (kb) 3014 3015 3016 3017Strain fitness (log2 ratio) -1 0 1at 3014.646 kb on - strandat 3014.737 kb on + strandat 3014.738 kb on - strandat 3014.743 kb on + strandat 3014.744 kb on - strandat 3014.813 kb on + strandat 3014.830 kb on + strandat 3015.078 kb on + strand, within SMc04018at 3015.079 kb on - strand, within SMc04018at 3015.079 kb on - strandat 3015.167 kb on + strand, within SMc04018at 3015.167 kb on + strand, within SMc04018at 3015.167 kb on + strand, within SMc04018at 3015.168 kb on - strand, within SMc04018at 3015.168 kb on - strand, within SMc04018at 3015.168 kb on - strand, within SMc04018at 3015.648 kb on - strand, within SMc04018at 3015.693 kb on + strand, within SMc04018at 3015.693 kb on + strand, within SMc04018at 3015.693 kb on + strand, within SMc04018at 3015.707 kb on + strand, within SMc04018at 3015.708 kb on - strand, within SMc04018at 3015.716 kb on + strand, within SMc04018at 3015.717 kb on - strand, within SMc04018at 3016.199 kb on + strand, within SMc04018at 3016.200 kb on - strand, within SMc04018at 3016.295 kb on + strand, within SMc04018at 3016.373 kb on + strand, within SMc04018at 3016.373 kb on + strand, within SMc04018at 3016.380 kb on - strand, within SMc04018at 3016.413 kb on - strand, within SMc04018at 3016.413 kb on - strand, within SMc04018at 3016.442 kb on + strand, within SMc04018at 3016.652 kb on + strandat 3016.652 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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3,014,646 - -0.5
3,014,737 + +0.7
3,014,738 - -0.3
3,014,743 + -0.5
3,014,744 - +0.2
3,014,813 + +0.4
3,014,830 + -0.4
3,015,078 + SMc04018 0.11 -0.1
3,015,079 - SMc04018 0.11 -0.3
3,015,079 - +0.1
3,015,167 + SMc04018 0.16 -0.3
3,015,167 + SMc04018 0.16 -0.4
3,015,167 + SMc04018 0.16 -0.9
3,015,168 - SMc04018 0.16 +0.8
3,015,168 - SMc04018 0.16 +0.2
3,015,168 - SMc04018 0.16 +1.1
3,015,648 - SMc04018 0.41 +0.7
3,015,693 + SMc04018 0.44 +0.3
3,015,693 + SMc04018 0.44 -0.9
3,015,693 + SMc04018 0.44 +0.4
3,015,707 + SMc04018 0.45 -0.1
3,015,708 - SMc04018 0.45 +0.9
3,015,716 + SMc04018 0.45 -0.2
3,015,717 - SMc04018 0.45 -0.9
3,016,199 + SMc04018 0.71 +0.3
3,016,200 - SMc04018 0.71 -1.1
3,016,295 + SMc04018 0.76 -0.1
3,016,373 + SMc04018 0.80 +0.4
3,016,373 + SMc04018 0.80 -0.0
3,016,380 - SMc04018 0.80 +0.1
3,016,413 - SMc04018 0.82 +0.2
3,016,413 - SMc04018 0.82 -0.1
3,016,442 + SMc04018 0.83 -0.6
3,016,652 + -0.1
3,016,652 + +0.2

Or see this region's nucleotide sequence