Strain Fitness in Sinorhizobium meliloti 1021 around SMc02297

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02296 and SMc02297 are separated by 109 nucleotidesSMc02297 and SMc02298 are separated by 121 nucleotidesSMc02298 and SMc02329 overlap by 4 nucleotides SMc02296: SMc02296 - modification enzyme transmembrane protein, at 669,078 to 670,658 SMc02296 SMc02297: SMc02297 - integrase/resolvase recombinase, at 670,768 to 672,309 SMc02297 SMc02298: SMc02298 - transposase ISRM1, at 672,431 to 672,823 SMc02298 SMc02329: SMc02329 - transposase ISRM1, at 672,820 to 673,512 SMc02329 Position (kb) 670 671 672 673Strain fitness (log2 ratio) -2 -1 0 1at 669.798 kb on + strand, within SMc02296at 669.798 kb on + strand, within SMc02296at 669.799 kb on - strand, within SMc02296at 669.904 kb on + strand, within SMc02296at 669.997 kb on + strand, within SMc02296at 669.998 kb on - strand, within SMc02296at 669.998 kb on - strand, within SMc02296at 669.998 kb on - strand, within SMc02296at 670.105 kb on + strand, within SMc02296at 670.153 kb on + strand, within SMc02296at 670.153 kb on + strand, within SMc02296at 670.211 kb on - strand, within SMc02296at 670.211 kb on - strand, within SMc02296at 670.211 kb on - strand, within SMc02296at 670.297 kb on + strand, within SMc02296at 670.298 kb on - strand, within SMc02296at 670.298 kb on - strand, within SMc02296at 670.405 kb on + strand, within SMc02296at 670.406 kb on - strand, within SMc02296at 670.429 kb on - strand, within SMc02296at 670.429 kb on - strand, within SMc02296at 670.453 kb on + strand, within SMc02296at 670.453 kb on + strand, within SMc02296at 670.570 kb on + strandat 670.570 kb on + strandat 670.571 kb on - strandat 670.662 kb on + strandat 670.663 kb on - strandat 670.668 kb on - strandat 670.744 kb on + strandat 670.745 kb on - strandat 670.747 kb on + strandat 670.770 kb on - strandat 670.864 kb on + strandat 670.864 kb on + strandat 670.864 kb on + strandat 670.864 kb on + strandat 670.865 kb on - strandat 670.921 kb on + strandat 670.922 kb on - strandat 670.946 kb on - strand, within SMc02297at 671.014 kb on - strand, within SMc02297at 671.054 kb on + strand, within SMc02297at 671.066 kb on + strand, within SMc02297at 671.067 kb on - strand, within SMc02297at 671.182 kb on - strand, within SMc02297at 671.182 kb on - strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.243 kb on + strand, within SMc02297at 671.244 kb on - strand, within SMc02297at 671.244 kb on - strand, within SMc02297at 671.244 kb on - strand, within SMc02297at 671.248 kb on + strand, within SMc02297at 671.248 kb on + strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.249 kb on - strand, within SMc02297at 671.250 kb on + strand, within SMc02297at 671.250 kb on + strand, within SMc02297at 671.251 kb on - strand, within SMc02297at 671.251 kb on - strand, within SMc02297at 671.251 kb on - strand, within SMc02297at 671.317 kb on + strand, within SMc02297at 671.408 kb on + strand, within SMc02297at 671.409 kb on - strand, within SMc02297at 671.434 kb on + strand, within SMc02297at 671.528 kb on + strand, within SMc02297at 671.529 kb on - strand, within SMc02297at 671.529 kb on - strand, within SMc02297at 671.529 kb on - strand, within SMc02297at 671.611 kb on + strand, within SMc02297at 671.611 kb on + strand, within SMc02297at 671.611 kb on + strand, within SMc02297at 671.611 kb on + strand, within SMc02297at 671.732 kb on + strand, within SMc02297at 671.732 kb on + strand, within SMc02297at 671.842 kb on + strand, within SMc02297at 671.877 kb on + strand, within SMc02297at 671.878 kb on - strand, within SMc02297at 671.880 kb on + strand, within SMc02297at 671.880 kb on + strand, within SMc02297at 671.881 kb on - strand, within SMc02297at 671.881 kb on - strand, within SMc02297at 671.974 kb on - strand, within SMc02297at 672.045 kb on + strand, within SMc02297at 672.045 kb on + strand, within SMc02297at 672.045 kb on + strand, within SMc02297at 672.045 kb on + strand, within SMc02297at 672.045 kb on + strand, within SMc02297at 672.046 kb on - strand, within SMc02297at 672.046 kb on - strand, within SMc02297at 672.046 kb on - strand, within SMc02297at 672.046 kb on - strand, within SMc02297at 672.046 kb on - strand, within SMc02297at 672.123 kb on + strand, within SMc02297at 672.124 kb on - strand, within SMc02297at 672.143 kb on + strand, within SMc02297at 672.143 kb on + strand, within SMc02297at 672.144 kb on - strand, within SMc02297at 672.212 kb on + strandat 672.212 kb on + strandat 672.213 kb on - strandat 672.213 kb on - strandat 672.215 kb on + strandat 672.215 kb on + strandat 672.215 kb on + strandat 672.215 kb on + strandat 672.216 kb on - strandat 672.216 kb on - strandat 672.351 kb on - strandat 672.367 kb on - strandat 672.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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669,798 + SMc02296 0.46 +0.2
669,798 + SMc02296 0.46 +0.3
669,799 - SMc02296 0.46 -0.0
669,904 + SMc02296 0.52 +1.3
669,997 + SMc02296 0.58 +0.3
669,998 - SMc02296 0.58 +1.0
669,998 - SMc02296 0.58 +0.8
669,998 - SMc02296 0.58 -0.2
670,105 + SMc02296 0.65 +1.1
670,153 + SMc02296 0.68 +0.0
670,153 + SMc02296 0.68 -0.7
670,211 - SMc02296 0.72 +1.4
670,211 - SMc02296 0.72 +1.3
670,211 - SMc02296 0.72 +0.2
670,297 + SMc02296 0.77 -0.7
670,298 - SMc02296 0.77 -0.3
670,298 - SMc02296 0.77 +0.0
670,405 + SMc02296 0.84 -0.5
670,406 - SMc02296 0.84 -2.0
670,429 - SMc02296 0.85 -0.1
670,429 - SMc02296 0.85 -0.2
670,453 + SMc02296 0.87 +0.9
670,453 + SMc02296 0.87 -2.2
670,570 + +0.8
670,570 + -0.5
670,571 - +1.2
670,662 + +1.6
670,663 - -0.1
670,668 - -0.3
670,744 + -0.8
670,745 - +0.6
670,747 + +0.7
670,770 - +0.5
670,864 + -1.2
670,864 + -0.4
670,864 + +0.0
670,864 + -0.2
670,865 - +0.1
670,921 + +0.1
670,922 - +0.0
670,946 - SMc02297 0.12 +0.4
671,014 - SMc02297 0.16 -0.5
671,054 + SMc02297 0.19 -0.0
671,066 + SMc02297 0.19 -0.7
671,067 - SMc02297 0.19 -0.9
671,182 - SMc02297 0.27 -0.1
671,182 - SMc02297 0.27 +0.1
671,243 + SMc02297 0.31 -0.5
671,243 + SMc02297 0.31 +0.1
671,243 + SMc02297 0.31 -0.5
671,243 + SMc02297 0.31 -0.7
671,244 - SMc02297 0.31 -0.3
671,244 - SMc02297 0.31 -0.1
671,244 - SMc02297 0.31 +0.8
671,248 + SMc02297 0.31 -0.0
671,248 + SMc02297 0.31 +0.4
671,249 - SMc02297 0.31 +0.0
671,249 - SMc02297 0.31 +0.2
671,249 - SMc02297 0.31 -1.0
671,249 - SMc02297 0.31 -0.4
671,250 + SMc02297 0.31 -1.1
671,250 + SMc02297 0.31 +0.6
671,251 - SMc02297 0.31 +0.2
671,251 - SMc02297 0.31 -0.1
671,251 - SMc02297 0.31 +0.3
671,317 + SMc02297 0.36 -0.4
671,408 + SMc02297 0.42 +0.1
671,409 - SMc02297 0.42 -0.4
671,434 + SMc02297 0.43 -0.1
671,528 + SMc02297 0.49 -0.8
671,529 - SMc02297 0.49 -0.4
671,529 - SMc02297 0.49 -0.4
671,529 - SMc02297 0.49 +0.0
671,611 + SMc02297 0.55 +0.0
671,611 + SMc02297 0.55 -1.0
671,611 + SMc02297 0.55 -1.9
671,611 + SMc02297 0.55 -0.4
671,732 + SMc02297 0.63 +0.6
671,732 + SMc02297 0.63 +0.4
671,842 + SMc02297 0.70 -0.8
671,877 + SMc02297 0.72 +0.8
671,878 - SMc02297 0.72 -0.3
671,880 + SMc02297 0.72 -0.2
671,880 + SMc02297 0.72 +0.3
671,881 - SMc02297 0.72 -0.3
671,881 - SMc02297 0.72 -0.7
671,974 - SMc02297 0.78 +0.0
672,045 + SMc02297 0.83 -0.3
672,045 + SMc02297 0.83 +0.0
672,045 + SMc02297 0.83 -0.3
672,045 + SMc02297 0.83 -0.2
672,045 + SMc02297 0.83 +0.0
672,046 - SMc02297 0.83 -0.2
672,046 - SMc02297 0.83 -0.1
672,046 - SMc02297 0.83 +0.1
672,046 - SMc02297 0.83 -0.7
672,046 - SMc02297 0.83 -0.4
672,123 + SMc02297 0.88 -2.4
672,124 - SMc02297 0.88 +0.0
672,143 + SMc02297 0.89 -0.2
672,143 + SMc02297 0.89 +1.0
672,144 - SMc02297 0.89 -0.2
672,212 + +0.3
672,212 + -0.1
672,213 - -0.7
672,213 - +0.2
672,215 + +1.6
672,215 + -0.5
672,215 + -1.0
672,215 + -0.3
672,216 - +0.8
672,216 - +0.3
672,351 - +0.6
672,367 - +1.3
672,367 - -0.9

Or see this region's nucleotide sequence