Experiment: 1-octen-3-ol 0.6030326667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02239 and SMc02240 are separated by 29 nucleotides SMc02240 and SMc02241 are separated by 108 nucleotides SMc02241 and SMc02242 are separated by 15 nucleotides SMc02242 and SMc02243 are separated by 2 nucleotides SMc02243 and SMc02244 are separated by 46 nucleotides
SMc02239: SMc02239 - hypothetical protein, at 604,053 to 604,514
SMc02239
SMc02240: SMc02240 - hypothetical protein, at 604,544 to 605,179
SMc02240
SMc02241: SMc02241 - hypothetical protein, at 605,288 to 606,226
SMc02241
SMc02242: SMc02242 - hypothetical protein, at 606,242 to 606,640
SMc02242
SMc02243: SMc02243 - hypothetical protein, at 606,643 to 607,146
SMc02243
SMc02244: SMc02244 - transmembrane protein, at 607,193 to 608,560
SMc02244
Position (kb) 605
606
607 Strain fitness (log2 ratio) -2
-1
0
1 at 604.374 kb on + strand, within SMc02239 at 604.374 kb on + strand, within SMc02239 at 604.374 kb on + strand at 604.374 kb on + strand, within SMc02239 at 604.375 kb on - strand, within SMc02239 at 604.375 kb on - strand, within SMc02239 at 604.375 kb on - strand, within SMc02239 at 604.512 kb on + strand at 604.545 kb on + strand at 604.558 kb on - strand at 604.725 kb on + strand, within SMc02240 at 604.725 kb on + strand, within SMc02240 at 604.725 kb on + strand, within SMc02240 at 604.726 kb on - strand, within SMc02240 at 604.770 kb on + strand, within SMc02240 at 604.788 kb on + strand, within SMc02240 at 604.944 kb on + strand, within SMc02240 at 604.945 kb on - strand at 604.945 kb on - strand, within SMc02240 at 605.001 kb on + strand, within SMc02240 at 605.002 kb on - strand, within SMc02240 at 605.143 kb on + strand at 605.261 kb on + strand at 605.407 kb on + strand, within SMc02241 at 605.408 kb on - strand, within SMc02241 at 605.553 kb on + strand, within SMc02241 at 605.553 kb on + strand, within SMc02241 at 605.554 kb on - strand, within SMc02241 at 605.554 kb on - strand, within SMc02241 at 605.554 kb on - strand, within SMc02241 at 605.554 kb on - strand, within SMc02241 at 605.664 kb on + strand, within SMc02241 at 605.695 kb on + strand, within SMc02241 at 605.892 kb on + strand, within SMc02241 at 605.893 kb on - strand, within SMc02241 at 605.893 kb on - strand, within SMc02241 at 605.916 kb on + strand, within SMc02241 at 605.917 kb on - strand, within SMc02241 at 605.947 kb on + strand, within SMc02241 at 606.010 kb on + strand, within SMc02241 at 606.011 kb on - strand, within SMc02241 at 606.061 kb on - strand, within SMc02241 at 606.278 kb on + strand at 606.343 kb on - strand, within SMc02242 at 606.343 kb on - strand, within SMc02242 at 606.343 kb on - strand, within SMc02242 at 606.388 kb on - strand, within SMc02242 at 606.497 kb on + strand, within SMc02242 at 606.498 kb on - strand, within SMc02242 at 606.498 kb on - strand, within SMc02242 at 606.501 kb on - strand, within SMc02242 at 606.569 kb on + strand, within SMc02242 at 606.794 kb on - strand, within SMc02243 at 606.913 kb on - strand, within SMc02243 at 606.934 kb on + strand, within SMc02243 at 607.016 kb on - strand, within SMc02243 at 607.016 kb on - strand, within SMc02243 at 607.016 kb on - strand, within SMc02243 at 607.027 kb on + strand, within SMc02243 at 607.120 kb on + strand at 607.120 kb on + strand at 607.166 kb on - strand at 607.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM remove 604,374 + SMc02239 0.69 -0.8 604,374 + SMc02239 0.69 +0.4 604,374 + -1.5 604,374 + SMc02239 0.69 +0.1 604,375 - SMc02239 0.70 +0.1 604,375 - SMc02239 0.70 +0.6 604,375 - SMc02239 0.70 +0.5 604,512 + -0.6 604,545 + +1.0 604,558 - +0.0 604,725 + SMc02240 0.28 -0.1 604,725 + SMc02240 0.28 -0.3 604,725 + SMc02240 0.28 -0.4 604,726 - SMc02240 0.29 -0.5 604,770 + SMc02240 0.36 +0.4 604,788 + SMc02240 0.38 -0.1 604,944 + SMc02240 0.63 +0.1 604,945 - +0.1 604,945 - SMc02240 0.63 +0.2 605,001 + SMc02240 0.72 -0.2 605,002 - SMc02240 0.72 -0.6 605,143 + -1.3 605,261 + -0.1 605,407 + SMc02241 0.13 -0.0 605,408 - SMc02241 0.13 -0.5 605,553 + SMc02241 0.28 -0.5 605,553 + SMc02241 0.28 -2.2 605,554 - SMc02241 0.28 +0.5 605,554 - SMc02241 0.28 -0.1 605,554 - SMc02241 0.28 -0.5 605,554 - SMc02241 0.28 -0.4 605,664 + SMc02241 0.40 -1.5 605,695 + SMc02241 0.43 -0.7 605,892 + SMc02241 0.64 -0.0 605,893 - SMc02241 0.64 -0.1 605,893 - SMc02241 0.64 +0.1 605,916 + SMc02241 0.67 -0.2 605,917 - SMc02241 0.67 +0.1 605,947 + SMc02241 0.70 +0.5 606,010 + SMc02241 0.77 +0.4 606,011 - SMc02241 0.77 -0.4 606,061 - SMc02241 0.82 +0.7 606,278 + -0.9 606,343 - SMc02242 0.25 -0.4 606,343 - SMc02242 0.25 +0.2 606,343 - SMc02242 0.25 -0.1 606,388 - SMc02242 0.37 -0.0 606,497 + SMc02242 0.64 -0.6 606,498 - SMc02242 0.64 +0.6 606,498 - SMc02242 0.64 -0.5 606,501 - SMc02242 0.65 -0.4 606,569 + SMc02242 0.82 -0.5 606,794 - SMc02243 0.30 +0.3 606,913 - SMc02243 0.54 +1.4 606,934 + SMc02243 0.58 -0.4 607,016 - SMc02243 0.74 -0.7 607,016 - SMc02243 0.74 -0.9 607,016 - SMc02243 0.74 -0.2 607,027 + SMc02243 0.76 -0.1 607,120 + +0.2 607,120 + -0.7 607,166 - +0.3 607,181 - -0.8
Or see this region's nucleotide sequence