Strain Fitness in Sinorhizobium meliloti 1021 around SMa1637

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1636 and SMa1637 are separated by 30 nucleotidesSMa1637 and SMa1639 are separated by 598 nucleotidesSMa1639 and SMa1641 are separated by 12 nucleotides SMa1636: SMa1636 - transposase TRm17a, at 911,789 to 912,589 SMa1636 SMa1637: SMa1637 - transposase TRm17b, at 912,620 to 913,126 SMa1637 SMa1639: SMa1639 - hypothetical protein, at 913,725 to 914,000 SMa1639 SMa1641: SMa1641 - NreB protein, at 914,013 to 915,335 SMa1641 Position (kb) 912 913 914Strain fitness (log2 ratio) -1 0 1at 911.620 kb on + strandat 911.620 kb on + strandat 911.621 kb on - strandat 913.578 kb on + strandat 913.579 kb on - strandat 913.641 kb on + strandat 913.642 kb on - strandat 913.687 kb on + strandat 913.688 kb on - strandat 913.724 kb on + strandat 913.966 kb on + strand, within SMa1639at 913.967 kb on - strand, within SMa1639

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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911,620 + +0.1
911,620 + +0.3
911,621 - +0.3
913,578 + -1.6
913,579 - -0.1
913,641 + -0.1
913,642 - +0.1
913,687 + +0.5
913,688 - +0.4
913,724 + +0.3
913,966 + SMa1639 0.87 -1.2
913,967 - SMa1639 0.88 +1.7

Or see this region's nucleotide sequence