Experiment: 1-octen-3-ol 0.6030326667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0579 and SMa0581 are separated by 435 nucleotides SMa0581 and SMa0583 are separated by 13 nucleotides SMa0583 and SMa0585 are separated by 62 nucleotides
SMa0579: SMa0579 - guanylate cyclase, at 307,530 to 309,989
SMa0579
SMa0581: SMa0581 - nitrate ABC transporter ATP-binding protein, at 310,425 to 311,225
SMa0581
SMa0583: SMa0583 - nitrate ABC transporter permease, at 311,239 to 312,132
SMa0583
SMa0585: SMa0585 - nitrate ABC transporter substrate-binding protein, at 312,195 to 313,487
SMa0585
Position (kb)
310
311
312 Strain fitness (log2 ratio)
-2
-1
0
1 at 309.428 kb on + strand, within SMa0579 at 309.428 kb on + strand, within SMa0579 at 309.432 kb on + strand, within SMa0579 at 309.433 kb on - strand, within SMa0579 at 309.433 kb on - strand, within SMa0579 at 309.449 kb on - strand, within SMa0579 at 309.449 kb on - strand, within SMa0579 at 309.574 kb on + strand, within SMa0579 at 309.575 kb on - strand, within SMa0579 at 309.575 kb on - strand, within SMa0579 at 309.575 kb on - strand, within SMa0579 at 309.575 kb on - strand, within SMa0579 at 309.608 kb on + strand, within SMa0579 at 309.608 kb on + strand, within SMa0579 at 309.608 kb on + strand, within SMa0579 at 309.660 kb on - strand, within SMa0579 at 309.660 kb on - strand, within SMa0579 at 309.735 kb on + strand, within SMa0579 at 309.735 kb on + strand, within SMa0579 at 309.736 kb on - strand, within SMa0579 at 309.805 kb on + strand at 309.806 kb on - strand at 309.806 kb on - strand at 309.811 kb on - strand at 309.825 kb on + strand at 309.896 kb on - strand at 310.085 kb on + strand at 310.123 kb on + strand at 310.123 kb on + strand at 310.124 kb on - strand at 310.353 kb on + strand at 310.353 kb on + strand at 310.353 kb on + strand at 310.354 kb on - strand at 310.358 kb on + strand at 310.495 kb on + strand at 310.495 kb on + strand at 310.496 kb on - strand at 310.652 kb on + strand, within SMa0581 at 311.069 kb on + strand, within SMa0581 at 311.069 kb on + strand at 311.069 kb on - strand, within SMa0581 at 311.070 kb on - strand, within SMa0581 at 311.212 kb on + strand at 311.213 kb on - strand at 311.213 kb on - strand at 311.322 kb on - strand at 311.322 kb on - strand at 311.322 kb on - strand at 311.322 kb on - strand at 311.455 kb on - strand, within SMa0583 at 311.471 kb on + strand, within SMa0583 at 311.471 kb on + strand, within SMa0583 at 311.472 kb on - strand, within SMa0583 at 311.864 kb on + strand, within SMa0583 at 311.864 kb on + strand, within SMa0583 at 311.865 kb on - strand, within SMa0583
Per-strain Table
Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM remove 309,428 + SMa0579 0.77 +0.3 309,428 + SMa0579 0.77 -0.7 309,432 + SMa0579 0.77 +0.1 309,433 - SMa0579 0.77 -0.6 309,433 - SMa0579 0.77 +1.7 309,449 - SMa0579 0.78 -1.8 309,449 - SMa0579 0.78 -0.3 309,574 + SMa0579 0.83 -0.1 309,575 - SMa0579 0.83 +0.3 309,575 - SMa0579 0.83 +1.7 309,575 - SMa0579 0.83 -0.1 309,575 - SMa0579 0.83 -1.2 309,608 + SMa0579 0.84 -0.1 309,608 + SMa0579 0.84 -0.2 309,608 + SMa0579 0.84 -0.1 309,660 - SMa0579 0.87 -0.1 309,660 - SMa0579 0.87 -0.0 309,735 + SMa0579 0.90 -0.5 309,735 + SMa0579 0.90 -0.5 309,736 - SMa0579 0.90 +1.2 309,805 + -0.1 309,806 - -0.2 309,806 - +0.2 309,811 - +0.1 309,825 + -0.1 309,896 - +1.4 310,085 + +0.1 310,123 + +1.1 310,123 + -0.6 310,124 - +0.5 310,353 + -0.2 310,353 + +1.4 310,353 + -0.1 310,354 - -0.8 310,358 + +0.2 310,495 + +0.6 310,495 + -0.6 310,496 - +0.2 310,652 + SMa0581 0.28 +0.3 311,069 + SMa0581 0.80 +0.1 311,069 + -1.5 311,069 - SMa0581 0.80 +0.8 311,070 - SMa0581 0.81 +0.3 311,212 + -0.7 311,213 - -0.2 311,213 - -0.2 311,322 - -0.2 311,322 - -0.0 311,322 - -0.2 311,322 - +0.4 311,455 - SMa0583 0.24 -0.3 311,471 + SMa0583 0.26 +0.8 311,471 + SMa0583 0.26 -0.0 311,472 - SMa0583 0.26 +0.8 311,864 + SMa0583 0.70 +0.3 311,864 + SMa0583 0.70 +0.5 311,865 - SMa0583 0.70 +0.3
Or see this region's nucleotide sequence