Strain Fitness in Sinorhizobium meliloti 1021 around SMa0450

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0448 and SMa0450 are separated by 549 nucleotides SMa0448: SMa0448 - hypothetical protein, at 240,025 to 240,435 SMa0448 SMa0450: SMa0450 - hypothetical protein, at 240,985 to 241,272 SMa0450 Position (kb) 240 241 242Strain fitness (log2 ratio) -2 -1 0 1at 240.056 kb on + strandat 240.057 kb on - strandat 240.057 kb on - strandat 240.080 kb on + strand, within SMa0448at 240.081 kb on - strand, within SMa0448at 240.081 kb on - strand, within SMa0448at 240.172 kb on + strand, within SMa0448at 240.407 kb on - strandat 240.458 kb on + strandat 240.459 kb on - strandat 240.525 kb on + strandat 240.567 kb on - strandat 240.567 kb on - strandat 240.659 kb on + strandat 240.660 kb on - strandat 240.660 kb on - strandat 240.728 kb on - strandat 240.778 kb on - strandat 240.867 kb on + strandat 241.054 kb on + strand, within SMa0450at 241.058 kb on + strand, within SMa0450at 241.059 kb on - strand, within SMa0450at 241.270 kb on + strandat 241.325 kb on - strandat 241.325 kb on - strandat 241.395 kb on + strandat 241.395 kb on + strandat 241.420 kb on + strandat 241.420 kb on + strandat 241.420 kb on + strandat 241.422 kb on + strandat 241.423 kb on - strandat 241.423 kb on - strandat 241.423 kb on - strandat 241.423 kb on - strandat 241.503 kb on + strandat 241.503 kb on + strandat 241.504 kb on - strandat 241.546 kb on - strandat 241.548 kb on + strandat 241.548 kb on + strandat 241.549 kb on - strandat 241.549 kb on - strandat 241.549 kb on - strandat 241.642 kb on - strandat 241.744 kb on + strandat 241.910 kb on + strandat 242.109 kb on - strandat 242.111 kb on - strandat 242.175 kb on + strandat 242.175 kb on + strandat 242.176 kb on - strandat 242.182 kb on + strandat 242.271 kb on - strandat 242.271 kb on - strandat 242.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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240,056 + +0.2
240,057 - +0.0
240,057 - -0.2
240,080 + SMa0448 0.13 -1.1
240,081 - SMa0448 0.14 +0.7
240,081 - SMa0448 0.14 -1.0
240,172 + SMa0448 0.36 -0.1
240,407 - +0.7
240,458 + -0.2
240,459 - -0.2
240,525 + -0.4
240,567 - -1.9
240,567 - -0.2
240,659 + -0.3
240,660 - +0.7
240,660 - +0.6
240,728 - -0.6
240,778 - +0.3
240,867 + +0.2
241,054 + SMa0450 0.24 +0.2
241,058 + SMa0450 0.25 +1.0
241,059 - SMa0450 0.26 +0.3
241,270 + +0.0
241,325 - +0.0
241,325 - +0.7
241,395 + +0.1
241,395 + +0.9
241,420 + -0.6
241,420 + +1.3
241,420 + +0.9
241,422 + -0.1
241,423 - +0.3
241,423 - +0.2
241,423 - -0.1
241,423 - +0.3
241,503 + +0.0
241,503 + -0.1
241,504 - -0.3
241,546 - +0.8
241,548 + +0.8
241,548 + +0.5
241,549 - -0.1
241,549 - -1.1
241,549 - -0.2
241,642 - +0.3
241,744 + -0.1
241,910 + +0.2
242,109 - -1.0
242,111 - -0.1
242,175 + -0.7
242,175 + +0.2
242,176 - -1.8
242,182 + -0.1
242,271 - -0.5
242,271 - -0.4
242,271 - -0.0

Or see this region's nucleotide sequence