Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21151

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21149 and SM_b21150 overlap by 4 nucleotidesSM_b21150 and SM_b21151 are separated by 29 nucleotidesSM_b21151 and SM_b21152 are separated by 88 nucleotides SM_b21149: SM_b21149 - sugar uptake ABC transporter permease, at 893,787 to 894,671 _b21149 SM_b21150: SM_b21150 - sugar uptake ABC transporter permease, at 894,668 to 895,525 _b21150 SM_b21151: SM_b21151 - substrate-binding protein of a sugar uptake ABC transporter system, at 895,555 to 896,784 _b21151 SM_b21152: SM_b21152 - sugar uptake ABC transporter ATP-binding protein, at 896,873 to 898,006 _b21152 Position (kb) 895 896 897Strain fitness (log2 ratio) -1 0 1 2 3at 894.599 kb on + strandat 894.627 kb on + strandat 894.627 kb on + strandat 894.704 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.722 kb on + strandat 894.783 kb on + strand, within SM_b21150at 894.783 kb on + strand, within SM_b21150at 894.783 kb on + strand, within SM_b21150at 894.858 kb on - strand, within SM_b21150at 894.858 kb on - strand, within SM_b21150at 894.898 kb on + strand, within SM_b21150at 894.899 kb on - strand, within SM_b21150at 894.968 kb on + strand, within SM_b21150at 894.968 kb on + strand, within SM_b21150at 894.969 kb on - strand, within SM_b21150at 895.104 kb on - strand, within SM_b21150at 895.169 kb on + strand, within SM_b21150at 895.169 kb on + strand, within SM_b21150at 895.170 kb on - strand, within SM_b21150at 895.232 kb on + strand, within SM_b21150at 895.239 kb on + strand, within SM_b21150at 895.240 kb on - strand, within SM_b21150at 895.281 kb on + strand, within SM_b21150at 895.281 kb on + strand, within SM_b21150at 895.310 kb on + strandat 895.311 kb on - strand, within SM_b21150at 895.358 kb on + strand, within SM_b21150at 895.358 kb on + strand, within SM_b21150at 895.359 kb on - strand, within SM_b21150at 895.389 kb on - strand, within SM_b21150at 895.485 kb on - strandat 895.524 kb on - strandat 895.534 kb on + strandat 895.560 kb on + strandat 895.561 kb on - strandat 895.561 kb on - strandat 895.561 kb on - strandat 895.576 kb on - strandat 895.660 kb on + strandat 895.684 kb on - strand, within SM_b21151at 895.696 kb on + strand, within SM_b21151at 895.696 kb on + strand, within SM_b21151at 895.696 kb on + strand, within SM_b21151at 895.696 kb on + strand, within SM_b21151at 895.820 kb on - strand, within SM_b21151at 895.906 kb on + strand, within SM_b21151at 895.907 kb on - strand, within SM_b21151at 895.914 kb on + strand, within SM_b21151at 895.914 kb on + strand, within SM_b21151at 895.960 kb on - strand, within SM_b21151at 895.985 kb on - strand, within SM_b21151at 896.158 kb on + strand, within SM_b21151at 896.160 kb on + strand, within SM_b21151at 896.161 kb on - strand, within SM_b21151at 896.161 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.194 kb on - strand, within SM_b21151at 896.236 kb on + strand, within SM_b21151at 896.236 kb on + strand, within SM_b21151at 896.236 kb on + strand, within SM_b21151at 896.278 kb on + strand, within SM_b21151at 896.278 kb on + strand, within SM_b21151at 896.388 kb on - strand, within SM_b21151at 896.625 kb on + strand, within SM_b21151at 896.636 kb on + strand, within SM_b21151at 896.636 kb on + strand, within SM_b21151at 896.641 kb on + strand, within SM_b21151at 896.642 kb on - strand, within SM_b21151at 896.642 kb on - strand, within SM_b21151at 896.776 kb on + strandat 896.777 kb on - strandat 896.783 kb on - strandat 896.783 kb on - strandat 896.783 kb on - strandat 896.783 kb on - strandat 896.783 kb on - strandat 896.783 kb on - strandat 896.830 kb on + strandat 896.830 kb on + strandat 896.830 kb on + strandat 896.830 kb on + strandat 896.872 kb on - strandat 896.918 kb on + strandat 896.918 kb on + strandat 896.918 kb on + strandat 896.919 kb on - strandat 896.919 kb on - strandat 896.919 kb on - strandat 896.919 kb on - strandat 897.122 kb on + strand, within SM_b21152at 897.122 kb on + strand, within SM_b21152at 897.122 kb on + strand, within SM_b21152at 897.123 kb on - strand, within SM_b21152at 897.123 kb on - strand, within SM_b21152at 897.123 kb on - strand, within SM_b21152at 897.131 kb on + strand, within SM_b21152at 897.139 kb on + strand, within SM_b21152at 897.232 kb on - strand, within SM_b21152at 897.232 kb on - strand, within SM_b21152at 897.437 kb on + strand, within SM_b21152at 897.437 kb on + strand, within SM_b21152at 897.537 kb on - strand, within SM_b21152at 897.537 kb on - strand, within SM_b21152at 897.553 kb on + strand, within SM_b21152at 897.554 kb on - strand, within SM_b21152at 897.555 kb on + strand, within SM_b21152at 897.555 kb on + strand, within SM_b21152at 897.555 kb on + strand, within SM_b21152at 897.556 kb on - strand, within SM_b21152at 897.644 kb on + strand, within SM_b21152at 897.644 kb on + strand, within SM_b21152at 897.644 kb on + strand, within SM_b21152at 897.706 kb on - strand, within SM_b21152at 897.777 kb on + strand, within SM_b21152

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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894,599 + +0.6
894,627 + +1.6
894,627 + -0.5
894,704 + -0.5
894,722 + +0.2
894,722 + +0.5
894,722 + -0.6
894,722 + -0.5
894,722 + -1.2
894,783 + SM_b21150 0.13 +0.6
894,783 + SM_b21150 0.13 +0.1
894,783 + SM_b21150 0.13 -0.3
894,858 - SM_b21150 0.22 -0.1
894,858 - SM_b21150 0.22 -0.0
894,898 + SM_b21150 0.27 -1.1
894,899 - SM_b21150 0.27 -0.1
894,968 + SM_b21150 0.35 -0.2
894,968 + SM_b21150 0.35 -0.7
894,969 - SM_b21150 0.35 +0.9
895,104 - SM_b21150 0.51 -0.5
895,169 + SM_b21150 0.58 -1.4
895,169 + SM_b21150 0.58 +0.2
895,170 - SM_b21150 0.59 -0.1
895,232 + SM_b21150 0.66 +1.4
895,239 + SM_b21150 0.67 -0.5
895,240 - SM_b21150 0.67 -0.1
895,281 + SM_b21150 0.71 +0.1
895,281 + SM_b21150 0.71 -0.4
895,310 + -0.7
895,311 - SM_b21150 0.75 -1.4
895,358 + SM_b21150 0.80 -0.3
895,358 + SM_b21150 0.80 -0.4
895,359 - SM_b21150 0.81 -0.3
895,389 - SM_b21150 0.84 +0.5
895,485 - +0.5
895,524 - -0.7
895,534 + -0.0
895,560 + +0.9
895,561 - +0.5
895,561 - +0.0
895,561 - +0.4
895,576 - -1.3
895,660 + -0.3
895,684 - SM_b21151 0.10 +0.3
895,696 + SM_b21151 0.11 -0.4
895,696 + SM_b21151 0.11 +1.0
895,696 + SM_b21151 0.11 +0.1
895,696 + SM_b21151 0.11 -0.5
895,820 - SM_b21151 0.22 +3.2
895,906 + SM_b21151 0.29 -0.3
895,907 - SM_b21151 0.29 +0.4
895,914 + SM_b21151 0.29 -0.1
895,914 + SM_b21151 0.29 +0.1
895,960 - SM_b21151 0.33 +1.1
895,985 - SM_b21151 0.35 +1.4
896,158 + SM_b21151 0.49 +0.3
896,160 + SM_b21151 0.49 +0.5
896,161 - SM_b21151 0.49 -0.2
896,161 - SM_b21151 0.49 -0.2
896,194 - SM_b21151 0.52 -0.5
896,194 - SM_b21151 0.52 -1.2
896,194 - SM_b21151 0.52 -0.1
896,194 - SM_b21151 0.52 +0.0
896,236 + SM_b21151 0.55 +0.8
896,236 + SM_b21151 0.55 -0.3
896,236 + SM_b21151 0.55 -1.4
896,278 + SM_b21151 0.59 +0.4
896,278 + SM_b21151 0.59 +1.4
896,388 - SM_b21151 0.68 +0.6
896,625 + SM_b21151 0.87 +0.1
896,636 + SM_b21151 0.88 +0.3
896,636 + SM_b21151 0.88 -0.9
896,641 + SM_b21151 0.88 -0.1
896,642 - SM_b21151 0.88 -0.2
896,642 - SM_b21151 0.88 +0.2
896,776 + -0.1
896,777 - +0.4
896,783 - -0.2
896,783 - -0.1
896,783 - -0.3
896,783 - -0.2
896,783 - -0.0
896,783 - +0.2
896,830 + -1.1
896,830 + +0.1
896,830 + -0.3
896,830 + +0.1
896,872 - +1.4
896,918 + -0.4
896,918 + +1.6
896,918 + -0.3
896,919 - -0.1
896,919 - -0.0
896,919 - -0.3
896,919 - -0.3
897,122 + SM_b21152 0.22 -0.8
897,122 + SM_b21152 0.22 -0.3
897,122 + SM_b21152 0.22 -1.4
897,123 - SM_b21152 0.22 -0.1
897,123 - SM_b21152 0.22 +0.8
897,123 - SM_b21152 0.22 -0.0
897,131 + SM_b21152 0.23 +0.0
897,139 + SM_b21152 0.23 -1.1
897,232 - SM_b21152 0.32 +1.9
897,232 - SM_b21152 0.32 +0.5
897,437 + SM_b21152 0.50 +0.3
897,437 + SM_b21152 0.50 +2.5
897,537 - SM_b21152 0.59 +0.1
897,537 - SM_b21152 0.59 +0.4
897,553 + SM_b21152 0.60 -0.3
897,554 - SM_b21152 0.60 +0.8
897,555 + SM_b21152 0.60 -0.1
897,555 + SM_b21152 0.60 +0.2
897,555 + SM_b21152 0.60 -0.2
897,556 - SM_b21152 0.60 +0.2
897,644 + SM_b21152 0.68 -0.0
897,644 + SM_b21152 0.68 -0.1
897,644 + SM_b21152 0.68 +0.6
897,706 - SM_b21152 0.73 -0.4
897,777 + SM_b21152 0.80 -0.5

Or see this region's nucleotide sequence