Strain Fitness in Sinorhizobium meliloti 1021 around SMc04008

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04007 and SMc04008 are separated by 19 nucleotidesSMc04008 and SMc04009 are separated by 107 nucleotidesSMc04009 and SMc04010 are separated by 69 nucleotides SMc04007: SMc04007 - hypothetical protein, at 3,002,115 to 3,002,909 SMc04007 SMc04008: SMc04008 - hypothetical protein, at 3,002,929 to 3,003,234 SMc04008 SMc04009: SMc04009 - hypothetical protein, at 3,003,342 to 3,003,614 SMc04009 SMc04010: SMc04010 - hypothetical protein, at 3,003,684 to 3,005,372 SMc04010 Position (kb) 3002 3003 3004Strain fitness (log2 ratio) -2 -1 0 1at 3002.038 kb on + strandat 3002.039 kb on - strandat 3002.092 kb on - strandat 3002.124 kb on + strandat 3002.125 kb on - strandat 3002.133 kb on + strandat 3002.134 kb on - strandat 3002.211 kb on + strand, within SMc04007at 3002.211 kb on + strand, within SMc04007at 3002.260 kb on - strand, within SMc04007at 3002.264 kb on + strand, within SMc04007at 3002.456 kb on - strand, within SMc04007at 3002.475 kb on + strand, within SMc04007at 3002.476 kb on - strand, within SMc04007at 3002.488 kb on + strand, within SMc04007at 3002.691 kb on + strand, within SMc04007at 3002.692 kb on - strand, within SMc04007at 3002.715 kb on - strand, within SMc04007at 3002.721 kb on + strand, within SMc04007at 3002.722 kb on - strand, within SMc04007at 3002.722 kb on - strand, within SMc04007at 3002.868 kb on + strandat 3002.898 kb on + strandat 3002.899 kb on - strandat 3003.151 kb on + strand, within SMc04008at 3003.152 kb on - strand, within SMc04008at 3003.232 kb on + strandat 3003.233 kb on - strandat 3003.660 kb on + strandat 3003.661 kb on - strandat 3003.667 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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3,002,038 + -0.3
3,002,039 - -0.3
3,002,092 - -1.5
3,002,124 + +0.4
3,002,125 - -0.7
3,002,133 + +0.3
3,002,134 - -0.8
3,002,211 + SMc04007 0.12 +1.1
3,002,211 + SMc04007 0.12 +1.0
3,002,260 - SMc04007 0.18 -0.1
3,002,264 + SMc04007 0.19 -0.1
3,002,456 - SMc04007 0.43 +0.3
3,002,475 + SMc04007 0.45 -0.1
3,002,476 - SMc04007 0.45 +0.5
3,002,488 + SMc04007 0.47 -1.8
3,002,691 + SMc04007 0.72 +0.7
3,002,692 - SMc04007 0.73 -0.4
3,002,715 - SMc04007 0.75 +0.1
3,002,721 + SMc04007 0.76 -0.1
3,002,722 - SMc04007 0.76 +0.2
3,002,722 - SMc04007 0.76 -0.2
3,002,868 + -0.9
3,002,898 + -0.2
3,002,899 - +0.0
3,003,151 + SMc04008 0.73 -1.2
3,003,152 - SMc04008 0.73 -0.6
3,003,232 + -0.0
3,003,233 - -0.1
3,003,660 + +0.1
3,003,661 - -0.1
3,003,667 - +0.2

Or see this region's nucleotide sequence