Strain Fitness in Sinorhizobium meliloti 1021 around SMc02397

Experiment: 1-octen-3-ol 0.6030326667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02396 and SMc02397 are separated by 109 nucleotidesSMc02397 and SMc02398 are separated by 261 nucleotidesSMc02398 and SMc05004 overlap by 73 nucleotides SMc02396: SMc02396 - outer membrane protein, at 1,148,609 to 1,149,646 SMc02396 SMc02397: SMc02397 - integrase, at 1,149,756 to 1,150,688 SMc02397 SMc02398: SMc02398 - transposase ISRM11/ISRM2011-2, at 1,150,950 to 1,151,357 SMc02398 SMc05004: SMc05004 - hypothetical protein, at 1,151,285 to 1,151,770 SMc05004 SMc02399: SMc02399 - transposase ISRM11/ISRM2011-2, at 1,151,291 to 1,151,896 SMc02399 Position (kb) 1149 1150 1151Strain fitness (log2 ratio) -1 0 1 2 3at 1149.712 kb on + strandat 1149.719 kb on - strandat 1149.719 kb on - strandat 1149.791 kb on + strandat 1149.792 kb on - strandat 1149.911 kb on + strand, within SMc02397at 1149.934 kb on - strand, within SMc02397at 1150.070 kb on + strand, within SMc02397at 1150.071 kb on - strand, within SMc02397at 1150.133 kb on + strand, within SMc02397at 1150.179 kb on - strand, within SMc02397at 1150.192 kb on - strand, within SMc02397at 1150.201 kb on + strand, within SMc02397at 1150.207 kb on + strand, within SMc02397at 1150.207 kb on + strand, within SMc02397at 1150.208 kb on - strand, within SMc02397at 1150.336 kb on + strand, within SMc02397at 1150.336 kb on + strand, within SMc02397at 1150.337 kb on - strand, within SMc02397at 1150.337 kb on - strand, within SMc02397at 1150.419 kb on + strand, within SMc02397at 1150.419 kb on + strand, within SMc02397at 1150.510 kb on + strand, within SMc02397at 1150.511 kb on - strand, within SMc02397at 1150.511 kb on - strand, within SMc02397at 1150.511 kb on - strand, within SMc02397at 1150.511 kb on - strand, within SMc02397at 1150.613 kb on + strandat 1150.613 kb on + strandat 1150.614 kb on - strandat 1150.614 kb on - strandat 1150.615 kb on + strandat 1150.615 kb on + strandat 1150.616 kb on - strandat 1150.754 kb on + strandat 1150.754 kb on + strandat 1150.756 kb on + strandat 1150.847 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM
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1,149,712 + -0.4
1,149,719 - +0.6
1,149,719 - -1.0
1,149,791 + +0.1
1,149,792 - +0.1
1,149,911 + SMc02397 0.17 -0.7
1,149,934 - SMc02397 0.19 -0.1
1,150,070 + SMc02397 0.34 -0.7
1,150,071 - SMc02397 0.34 -0.5
1,150,133 + SMc02397 0.40 +1.2
1,150,179 - SMc02397 0.45 +0.8
1,150,192 - SMc02397 0.47 -1.3
1,150,201 + SMc02397 0.48 +1.1
1,150,207 + SMc02397 0.48 -0.7
1,150,207 + SMc02397 0.48 +1.7
1,150,208 - SMc02397 0.48 +0.5
1,150,336 + SMc02397 0.62 +1.1
1,150,336 + SMc02397 0.62 -0.1
1,150,337 - SMc02397 0.62 +0.6
1,150,337 - SMc02397 0.62 +2.9
1,150,419 + SMc02397 0.71 -0.3
1,150,419 + SMc02397 0.71 +1.7
1,150,510 + SMc02397 0.81 +0.6
1,150,511 - SMc02397 0.81 +0.4
1,150,511 - SMc02397 0.81 -0.3
1,150,511 - SMc02397 0.81 -0.1
1,150,511 - SMc02397 0.81 +1.0
1,150,613 + +0.3
1,150,613 + +1.0
1,150,614 - +0.2
1,150,614 - +0.7
1,150,615 + -0.2
1,150,615 + -1.0
1,150,616 - -0.7
1,150,754 + +0.3
1,150,754 + +0.7
1,150,756 + -0.0
1,150,847 + +0.3

Or see this region's nucleotide sequence