Experiment: 1-octen-3-ol 0.6030326667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21681 and SM_b20909 are separated by 111 nucleotides SM_b20909 and SM_b20910 are separated by 58 nucleotides SM_b20910 and SM_b20911 are separated by 224 nucleotides SM_b20911 and SM_b20912 are separated by 23 nucleotides
SM_b21681: SM_b21681 - hypothetical protein, at 1,318,407 to 1,318,583
_b21681
SM_b20909: SM_b20909 - hypothetical protein, at 1,318,695 to 1,318,988
_b20909
SM_b20910: SM_b20910 - hypothetical protein, at 1,319,047 to 1,319,355
_b20910
SM_b20911: SM_b20911 - hypothetical protein, at 1,319,580 to 1,319,786
_b20911
SM_b20912: SM_b20912 - ATP-dependent DNA ligase, at 1,319,810 to 1,320,904
_b20912
Position (kb)
1319
1320 Strain fitness (log2 ratio)
-1
0
1
2 at 1318.581 kb on + strand at 1318.718 kb on + strand at 1318.826 kb on + strand, within SM_b20909 at 1318.827 kb on - strand, within SM_b20909 at 1318.963 kb on + strand at 1318.963 kb on + strand at 1318.964 kb on - strand at 1319.022 kb on + strand at 1319.027 kb on + strand at 1319.048 kb on + strand at 1319.130 kb on + strand, within SM_b20910 at 1319.131 kb on - strand, within SM_b20910 at 1319.131 kb on - strand, within SM_b20910 at 1319.178 kb on + strand, within SM_b20910 at 1319.178 kb on + strand, within SM_b20910 at 1319.179 kb on - strand, within SM_b20910 at 1319.254 kb on + strand, within SM_b20910 at 1319.269 kb on + strand, within SM_b20910 at 1319.270 kb on - strand, within SM_b20910 at 1319.270 kb on - strand, within SM_b20910 at 1319.416 kb on + strand at 1319.419 kb on - strand at 1319.419 kb on - strand at 1319.419 kb on - strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.428 kb on + strand at 1319.428 kb on + strand at 1319.429 kb on - strand at 1319.429 kb on - strand at 1319.432 kb on + strand at 1319.432 kb on + strand at 1319.432 kb on + strand at 1319.433 kb on - strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.600 kb on - strand at 1319.664 kb on + strand, within SM_b20911 at 1319.664 kb on + strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.666 kb on + strand, within SM_b20911 at 1319.666 kb on + strand, within SM_b20911 at 1319.667 kb on - strand, within SM_b20911 at 1319.667 kb on - strand, within SM_b20911 at 1319.695 kb on + strand, within SM_b20911 at 1319.696 kb on - strand, within SM_b20911 at 1319.696 kb on - strand, within SM_b20911 at 1319.762 kb on + strand, within SM_b20911 at 1319.763 kb on - strand, within SM_b20911 at 1319.931 kb on - strand, within SM_b20912 at 1319.945 kb on + strand, within SM_b20912 at 1319.945 kb on + strand, within SM_b20912 at 1320.083 kb on + strand, within SM_b20912 at 1320.083 kb on + strand, within SM_b20912 at 1320.084 kb on - strand, within SM_b20912 at 1320.084 kb on - strand, within SM_b20912 at 1320.142 kb on + strand, within SM_b20912 at 1320.142 kb on + strand, within SM_b20912 at 1320.143 kb on - strand, within SM_b20912 at 1320.143 kb on - strand, within SM_b20912 at 1320.174 kb on + strand, within SM_b20912 at 1320.174 kb on + strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.266 kb on - strand, within SM_b20912 at 1320.318 kb on + strand, within SM_b20912 at 1320.319 kb on - strand, within SM_b20912 at 1320.507 kb on + strand, within SM_b20912 at 1320.525 kb on + strand, within SM_b20912 at 1320.525 kb on + strand, within SM_b20912 at 1320.722 kb on + strand, within SM_b20912 at 1320.722 kb on + strand, within SM_b20912
Per-strain Table
Position Strand Gene LocusTag Fraction 1-octen-3-ol 0.6030326667 mM remove 1,318,581 + -0.2 1,318,718 + +0.3 1,318,826 + SM_b20909 0.45 +0.8 1,318,827 - SM_b20909 0.45 +0.3 1,318,963 + +0.2 1,318,963 + -0.3 1,318,964 - -0.6 1,319,022 + -0.0 1,319,027 + +0.8 1,319,048 + -0.2 1,319,130 + SM_b20910 0.27 -0.2 1,319,131 - SM_b20910 0.27 +0.1 1,319,131 - SM_b20910 0.27 +0.3 1,319,178 + SM_b20910 0.42 -0.2 1,319,178 + SM_b20910 0.42 +0.3 1,319,179 - SM_b20910 0.43 -0.1 1,319,254 + SM_b20910 0.67 +0.8 1,319,269 + SM_b20910 0.72 -1.7 1,319,270 - SM_b20910 0.72 -0.1 1,319,270 - SM_b20910 0.72 +0.3 1,319,416 + +0.3 1,319,419 - -0.4 1,319,419 - -0.4 1,319,419 - +0.3 1,319,422 + +1.8 1,319,422 + +1.1 1,319,422 + -0.4 1,319,422 + -0.2 1,319,422 + +0.4 1,319,423 - +0.4 1,319,423 - +0.4 1,319,423 - -0.9 1,319,423 - +0.1 1,319,423 - +0.3 1,319,428 + +1.8 1,319,428 + +1.6 1,319,429 - +0.0 1,319,429 - +0.8 1,319,432 + +0.0 1,319,432 + +0.8 1,319,432 + -0.1 1,319,433 - -0.0 1,319,599 + -0.5 1,319,599 + -1.0 1,319,599 + +0.3 1,319,599 + +0.6 1,319,600 - +0.1 1,319,664 + SM_b20911 0.41 -1.0 1,319,664 + SM_b20911 0.41 -0.4 1,319,665 - SM_b20911 0.41 -0.1 1,319,665 - SM_b20911 0.41 -0.2 1,319,665 - SM_b20911 0.41 -1.0 1,319,665 - SM_b20911 0.41 -1.5 1,319,666 + SM_b20911 0.42 -1.0 1,319,666 + SM_b20911 0.42 -1.0 1,319,667 - SM_b20911 0.42 -0.7 1,319,667 - SM_b20911 0.42 -0.6 1,319,695 + SM_b20911 0.56 -0.2 1,319,696 - SM_b20911 0.56 +0.1 1,319,696 - SM_b20911 0.56 +0.1 1,319,762 + SM_b20911 0.88 +1.8 1,319,763 - SM_b20911 0.88 -0.7 1,319,931 - SM_b20912 0.11 +0.9 1,319,945 + SM_b20912 0.12 +0.1 1,319,945 + SM_b20912 0.12 +0.4 1,320,083 + SM_b20912 0.25 -0.4 1,320,083 + SM_b20912 0.25 +0.1 1,320,084 - SM_b20912 0.25 -0.6 1,320,084 - SM_b20912 0.25 -0.3 1,320,142 + SM_b20912 0.30 -0.3 1,320,142 + SM_b20912 0.30 -0.3 1,320,143 - SM_b20912 0.30 -1.1 1,320,143 - SM_b20912 0.30 -0.6 1,320,174 + SM_b20912 0.33 +1.3 1,320,174 + SM_b20912 0.33 +0.4 1,320,175 - SM_b20912 0.33 +0.7 1,320,175 - SM_b20912 0.33 +0.2 1,320,175 - SM_b20912 0.33 -0.3 1,320,266 - SM_b20912 0.42 -0.5 1,320,318 + SM_b20912 0.46 +0.1 1,320,319 - SM_b20912 0.46 +0.2 1,320,507 + SM_b20912 0.64 +0.2 1,320,525 + SM_b20912 0.65 -0.3 1,320,525 + SM_b20912 0.65 -0.4 1,320,722 + SM_b20912 0.83 -1.2 1,320,722 + SM_b20912 0.83 -0.3
Or see this region's nucleotide sequence