Strain Fitness in Sinorhizobium meliloti 1021 around SMc03887

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03886 and SMc03887 are separated by 451 nucleotidesSMc03887 and SMc03888 are separated by 9 nucleotides SMc03886: SMc03886 - transposase, at 3,552,832 to 3,553,908 SMc03886 SMc03887: SMc03887 - amino acid efflux protein, at 3,554,360 to 3,555,007 SMc03887 SMc03888: SMc03888 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,555,017 to 3,556,270 SMc03888 Position (kb) 3554 3555 3556Strain fitness (log2 ratio) -2 -1 0 1at 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.127 kb on + strandat 3554.128 kb on - strandat 3554.128 kb on - strandat 3554.128 kb on - strandat 3554.129 kb on + strandat 3554.129 kb on + strandat 3554.129 kb on + strandat 3554.130 kb on - strandat 3554.262 kb on + strandat 3554.325 kb on + strandat 3554.326 kb on - strandat 3554.384 kb on + strandat 3554.417 kb on + strandat 3554.417 kb on + strandat 3554.417 kb on + strandat 3554.418 kb on - strandat 3554.418 kb on - strandat 3554.419 kb on + strandat 3554.531 kb on + strand, within SMc03887at 3554.531 kb on + strand, within SMc03887at 3554.624 kb on + strand, within SMc03887at 3554.624 kb on + strand, within SMc03887at 3554.624 kb on + strand, within SMc03887at 3554.642 kb on + strand, within SMc03887at 3554.642 kb on + strand, within SMc03887at 3554.642 kb on + strand, within SMc03887at 3554.642 kb on + strand, within SMc03887at 3554.645 kb on - strand, within SMc03887at 3555.016 kb on - strandat 3555.018 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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3,554,127 + -1.2
3,554,127 + +0.1
3,554,127 + +0.1
3,554,127 + +0.6
3,554,127 + +0.3
3,554,127 + +0.2
3,554,127 + +1.2
3,554,127 + -0.1
3,554,127 + -0.5
3,554,128 - +0.2
3,554,128 - -0.0
3,554,128 - -0.2
3,554,129 + -0.3
3,554,129 + +0.2
3,554,129 + +0.3
3,554,130 - -1.9
3,554,262 + -0.4
3,554,325 + -0.0
3,554,326 - -0.5
3,554,384 + +0.3
3,554,417 + -0.3
3,554,417 + -0.1
3,554,417 + -0.6
3,554,418 - +0.3
3,554,418 - +0.2
3,554,419 + -0.4
3,554,531 + SMc03887 0.26 +0.5
3,554,531 + SMc03887 0.26 +0.3
3,554,624 + SMc03887 0.41 -0.1
3,554,624 + SMc03887 0.41 +0.0
3,554,624 + SMc03887 0.41 +0.3
3,554,642 + SMc03887 0.44 +0.3
3,554,642 + SMc03887 0.44 +0.0
3,554,642 + SMc03887 0.44 -0.6
3,554,642 + SMc03887 0.44 +0.8
3,554,645 - SMc03887 0.44 +0.2
3,555,016 - -0.2
3,555,018 + -0.2

Or see this region's nucleotide sequence