Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21264

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21263 and SM_b21264 are separated by 79 nucleotidesSM_b21264 and SM_b21265 are separated by 6 nucleotides SM_b21263: SM_b21263 - mureinpeptideoligopeptide ABC transporter permease, at 835,973 to 837,064 _b21263 SM_b21264: SM_b21264 - hypothetical protein, at 837,144 to 838,358 _b21264 SM_b21265: SM_b21265 - glycosyltransferase, at 838,365 to 839,612 _b21265 Position (kb) 837 838 839Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 836.154 kb on - strand, within SM_b21263at 836.154 kb on - strand, within SM_b21263at 836.154 kb on - strand, within SM_b21263at 836.269 kb on + strand, within SM_b21263at 836.270 kb on - strand, within SM_b21263at 836.645 kb on + strand, within SM_b21263at 836.646 kb on - strand, within SM_b21263at 836.656 kb on - strand, within SM_b21263at 836.667 kb on + strand, within SM_b21263at 836.738 kb on + strand, within SM_b21263at 836.738 kb on + strand, within SM_b21263at 836.738 kb on + strand, within SM_b21263at 836.963 kb on + strandat 836.963 kb on + strandat 836.964 kb on - strandat 836.964 kb on - strandat 837.007 kb on - strandat 837.057 kb on - strandat 837.103 kb on + strandat 837.143 kb on + strandat 837.180 kb on + strandat 837.180 kb on + strandat 837.180 kb on + strandat 837.180 kb on + strandat 837.181 kb on - strandat 837.181 kb on - strandat 837.191 kb on + strandat 837.252 kb on + strandat 837.252 kb on + strandat 837.253 kb on - strandat 837.349 kb on + strand, within SM_b21264at 837.350 kb on - strand, within SM_b21264at 837.369 kb on + strand, within SM_b21264at 837.369 kb on + strand, within SM_b21264at 837.369 kb on + strand, within SM_b21264at 837.370 kb on - strand, within SM_b21264at 837.370 kb on - strand, within SM_b21264at 837.371 kb on + strand, within SM_b21264at 837.371 kb on + strand, within SM_b21264at 837.372 kb on - strand, within SM_b21264at 837.513 kb on - strand, within SM_b21264at 837.513 kb on - strand, within SM_b21264at 837.522 kb on + strand, within SM_b21264at 837.640 kb on - strand, within SM_b21264at 837.675 kb on + strand, within SM_b21264at 837.676 kb on - strand, within SM_b21264at 837.780 kb on - strand, within SM_b21264at 837.795 kb on + strand, within SM_b21264at 837.795 kb on + strand, within SM_b21264at 837.795 kb on + strand, within SM_b21264at 837.799 kb on + strand, within SM_b21264at 837.799 kb on + strand, within SM_b21264at 837.799 kb on + strand, within SM_b21264at 837.862 kb on - strand, within SM_b21264at 837.887 kb on + strand, within SM_b21264at 837.887 kb on + strand, within SM_b21264at 837.912 kb on + strand, within SM_b21264at 837.913 kb on - strand, within SM_b21264at 837.976 kb on + strand, within SM_b21264at 837.976 kb on + strand, within SM_b21264at 837.977 kb on - strand, within SM_b21264at 838.054 kb on - strand, within SM_b21264at 838.121 kb on - strand, within SM_b21264at 838.286 kb on - strandat 838.316 kb on + strandat 838.317 kb on - strandat 838.548 kb on + strand, within SM_b21265at 838.548 kb on + strand, within SM_b21265at 838.548 kb on + strand, within SM_b21265at 838.549 kb on - strand, within SM_b21265at 838.561 kb on - strand, within SM_b21265at 838.785 kb on + strand, within SM_b21265at 838.786 kb on - strand, within SM_b21265at 838.795 kb on + strand, within SM_b21265at 838.795 kb on + strand, within SM_b21265at 838.795 kb on + strand, within SM_b21265at 838.795 kb on + strand, within SM_b21265at 838.796 kb on - strand, within SM_b21265at 838.796 kb on - strand, within SM_b21265at 838.850 kb on + strand, within SM_b21265at 838.851 kb on - strand, within SM_b21265at 838.918 kb on - strand, within SM_b21265at 838.968 kb on + strand, within SM_b21265at 838.969 kb on - strand, within SM_b21265at 839.091 kb on + strand, within SM_b21265at 839.153 kb on + strandat 839.154 kb on - strand, within SM_b21265

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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836,154 - SM_b21263 0.17 +1.1
836,154 - SM_b21263 0.17 +0.1
836,154 - SM_b21263 0.17 +0.9
836,269 + SM_b21263 0.27 -0.3
836,270 - SM_b21263 0.27 +0.2
836,645 + SM_b21263 0.62 -0.7
836,646 - SM_b21263 0.62 -0.5
836,656 - SM_b21263 0.63 -0.4
836,667 + SM_b21263 0.64 +0.7
836,738 + SM_b21263 0.70 +0.4
836,738 + SM_b21263 0.70 +0.3
836,738 + SM_b21263 0.70 +0.0
836,963 + +0.1
836,963 + -0.9
836,964 - +0.8
836,964 - +0.1
837,007 - -0.7
837,057 - -0.3
837,103 + -0.5
837,143 + -1.2
837,180 + -1.8
837,180 + +0.1
837,180 + -1.0
837,180 + -1.7
837,181 - +0.1
837,181 - -0.9
837,191 + -2.6
837,252 + -0.2
837,252 + -1.7
837,253 - -2.3
837,349 + SM_b21264 0.17 -1.2
837,350 - SM_b21264 0.17 +2.1
837,369 + SM_b21264 0.19 +1.1
837,369 + SM_b21264 0.19 -0.2
837,369 + SM_b21264 0.19 +1.1
837,370 - SM_b21264 0.19 -2.4
837,370 - SM_b21264 0.19 -1.1
837,371 + SM_b21264 0.19 +0.1
837,371 + SM_b21264 0.19 -0.4
837,372 - SM_b21264 0.19 -2.2
837,513 - SM_b21264 0.30 -1.4
837,513 - SM_b21264 0.30 +0.5
837,522 + SM_b21264 0.31 -1.4
837,640 - SM_b21264 0.41 -2.8
837,675 + SM_b21264 0.44 -0.0
837,676 - SM_b21264 0.44 -2.1
837,780 - SM_b21264 0.52 -0.7
837,795 + SM_b21264 0.54 -1.0
837,795 + SM_b21264 0.54 -2.1
837,795 + SM_b21264 0.54 -1.5
837,799 + SM_b21264 0.54 -1.6
837,799 + SM_b21264 0.54 -1.5
837,799 + SM_b21264 0.54 -1.0
837,862 - SM_b21264 0.59 -2.1
837,887 + SM_b21264 0.61 -1.6
837,887 + SM_b21264 0.61 +0.1
837,912 + SM_b21264 0.63 -2.0
837,913 - SM_b21264 0.63 -1.7
837,976 + SM_b21264 0.68 -2.2
837,976 + SM_b21264 0.68 -1.4
837,977 - SM_b21264 0.69 -1.6
838,054 - SM_b21264 0.75 -0.5
838,121 - SM_b21264 0.80 -2.1
838,286 - -0.5
838,316 + +0.3
838,317 - -1.4
838,548 + SM_b21265 0.15 -0.7
838,548 + SM_b21265 0.15 +0.8
838,548 + SM_b21265 0.15 -0.7
838,549 - SM_b21265 0.15 -0.5
838,561 - SM_b21265 0.16 -2.5
838,785 + SM_b21265 0.34 +0.9
838,786 - SM_b21265 0.34 -1.7
838,795 + SM_b21265 0.34 -0.6
838,795 + SM_b21265 0.34 -1.5
838,795 + SM_b21265 0.34 -1.6
838,795 + SM_b21265 0.34 -1.0
838,796 - SM_b21265 0.35 -2.4
838,796 - SM_b21265 0.35 -1.8
838,850 + SM_b21265 0.39 -1.5
838,851 - SM_b21265 0.39 -1.4
838,918 - SM_b21265 0.44 -0.9
838,968 + SM_b21265 0.48 -2.0
838,969 - SM_b21265 0.48 -1.2
839,091 + SM_b21265 0.58 -0.5
839,153 + -0.5
839,154 - SM_b21265 0.63 -2.1

Or see this region's nucleotide sequence