Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20885

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20883 and SM_b20884 are separated by 42 nucleotidesSM_b20884 and SM_b20885 are separated by 48 nucleotidesSM_b20885 and SM_b20886 are separated by 374 nucleotides SM_b20883: SM_b20883 - hypothetical protein, at 1,289,174 to 1,289,641 _b20883 SM_b20884: SM_b20884 - hypothetical protein, at 1,289,684 to 1,290,118 _b20884 SM_b20885: SM_b20885 - hypothetical protein, at 1,290,167 to 1,291,087 _b20885 SM_b20886: SM_b20886 - hypothetical protein, at 1,291,462 to 1,292,871 _b20886 Position (kb) 1290 1291 1292Strain fitness (log2 ratio) -2 -1 0 1at 1289.261 kb on + strand, within SM_b20883at 1289.557 kb on + strand, within SM_b20883at 1289.557 kb on + strand, within SM_b20883at 1290.058 kb on + strand, within SM_b20884at 1290.059 kb on - strand, within SM_b20884at 1290.158 kb on + strandat 1290.158 kb on + strandat 1290.158 kb on + strandat 1290.237 kb on + strandat 1290.237 kb on + strandat 1290.237 kb on + strandat 1290.238 kb on - strandat 1290.238 kb on - strandat 1290.257 kb on + strandat 1290.257 kb on + strandat 1290.258 kb on - strandat 1290.340 kb on - strand, within SM_b20885at 1290.340 kb on - strand, within SM_b20885at 1290.384 kb on + strand, within SM_b20885at 1290.384 kb on + strand, within SM_b20885at 1290.385 kb on - strand, within SM_b20885at 1290.385 kb on - strand, within SM_b20885at 1290.454 kb on + strand, within SM_b20885at 1290.522 kb on + strand, within SM_b20885at 1290.522 kb on + strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.523 kb on - strand, within SM_b20885at 1290.564 kb on + strand, within SM_b20885at 1290.588 kb on + strand, within SM_b20885at 1290.712 kb on + strand, within SM_b20885at 1290.846 kb on - strand, within SM_b20885at 1290.858 kb on + strandat 1290.858 kb on + strand, within SM_b20885at 1290.859 kb on - strand, within SM_b20885at 1290.859 kb on - strand, within SM_b20885at 1290.976 kb on - strand, within SM_b20885at 1290.976 kb on - strand, within SM_b20885at 1291.020 kb on + strandat 1291.148 kb on - strandat 1291.191 kb on - strandat 1291.204 kb on - strandat 1291.249 kb on + strandat 1291.250 kb on - strandat 1291.347 kb on - strandat 1291.430 kb on - strandat 1291.447 kb on + strandat 1291.511 kb on - strandat 1291.531 kb on + strandat 1291.532 kb on - strandat 1291.532 kb on - strandat 1291.532 kb on - strandat 1291.532 kb on - strandat 1291.619 kb on - strand, within SM_b20886at 1291.665 kb on - strand, within SM_b20886at 1291.665 kb on - strand, within SM_b20886at 1291.757 kb on - strand, within SM_b20886at 1291.757 kb on - strand, within SM_b20886at 1291.892 kb on + strand, within SM_b20886at 1291.892 kb on + strand, within SM_b20886at 1291.892 kb on + strand, within SM_b20886at 1291.892 kb on + strand, within SM_b20886at 1291.912 kb on + strand, within SM_b20886at 1291.912 kb on + strand, within SM_b20886at 1291.913 kb on - strand, within SM_b20886at 1291.913 kb on - strand, within SM_b20886at 1291.913 kb on - strand, within SM_b20886at 1291.915 kb on + strand, within SM_b20886at 1291.915 kb on + strand, within SM_b20886at 1291.915 kb on + strand, within SM_b20886at 1291.915 kb on + strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.916 kb on - strand, within SM_b20886at 1291.957 kb on + strand, within SM_b20886at 1291.957 kb on + strand, within SM_b20886at 1291.958 kb on - strand, within SM_b20886at 1291.958 kb on - strand, within SM_b20886at 1292.038 kb on + strand, within SM_b20886at 1292.039 kb on - strand, within SM_b20886

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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1,289,261 + SM_b20883 0.19 -0.5
1,289,557 + SM_b20883 0.82 +0.3
1,289,557 + SM_b20883 0.82 -0.1
1,290,058 + SM_b20884 0.86 -0.5
1,290,059 - SM_b20884 0.86 -0.6
1,290,158 + +0.3
1,290,158 + -2.5
1,290,158 + +0.6
1,290,237 + -0.2
1,290,237 + +0.1
1,290,237 + -0.2
1,290,238 - -0.5
1,290,238 - +0.6
1,290,257 + +0.1
1,290,257 + -0.2
1,290,258 - -0.2
1,290,340 - SM_b20885 0.19 +0.9
1,290,340 - SM_b20885 0.19 +0.8
1,290,384 + SM_b20885 0.24 -0.4
1,290,384 + SM_b20885 0.24 +1.5
1,290,385 - SM_b20885 0.24 +0.0
1,290,385 - SM_b20885 0.24 -1.3
1,290,454 + SM_b20885 0.31 +1.6
1,290,522 + SM_b20885 0.39 +0.1
1,290,522 + SM_b20885 0.39 -0.1
1,290,523 - SM_b20885 0.39 +0.1
1,290,523 - SM_b20885 0.39 -2.0
1,290,523 - SM_b20885 0.39 +0.3
1,290,523 - SM_b20885 0.39 -0.1
1,290,523 - SM_b20885 0.39 +0.0
1,290,523 - SM_b20885 0.39 -0.5
1,290,564 + SM_b20885 0.43 -0.6
1,290,588 + SM_b20885 0.46 -0.2
1,290,712 + SM_b20885 0.59 -1.1
1,290,846 - SM_b20885 0.74 -0.1
1,290,858 + -0.2
1,290,858 + SM_b20885 0.75 +0.9
1,290,859 - SM_b20885 0.75 +0.0
1,290,859 - SM_b20885 0.75 -0.0
1,290,976 - SM_b20885 0.88 -0.7
1,290,976 - SM_b20885 0.88 -0.7
1,291,020 + -0.6
1,291,148 - +0.1
1,291,191 - +0.8
1,291,204 - +0.8
1,291,249 + +0.0
1,291,250 - -0.4
1,291,347 - +0.2
1,291,430 - -0.2
1,291,447 + +0.3
1,291,511 - +0.1
1,291,531 + +0.1
1,291,532 - -0.0
1,291,532 - +0.6
1,291,532 - +0.6
1,291,532 - +0.0
1,291,619 - SM_b20886 0.11 +1.1
1,291,665 - SM_b20886 0.14 +0.3
1,291,665 - SM_b20886 0.14 +0.9
1,291,757 - SM_b20886 0.21 +0.5
1,291,757 - SM_b20886 0.21 -1.0
1,291,892 + SM_b20886 0.30 +0.1
1,291,892 + SM_b20886 0.30 +1.1
1,291,892 + SM_b20886 0.30 +0.3
1,291,892 + SM_b20886 0.30 -0.7
1,291,912 + SM_b20886 0.32 +0.1
1,291,912 + SM_b20886 0.32 +1.5
1,291,913 - SM_b20886 0.32 +0.2
1,291,913 - SM_b20886 0.32 -0.2
1,291,913 - SM_b20886 0.32 -1.6
1,291,915 + SM_b20886 0.32 -0.2
1,291,915 + SM_b20886 0.32 -0.4
1,291,915 + SM_b20886 0.32 -0.2
1,291,915 + SM_b20886 0.32 -0.2
1,291,916 - SM_b20886 0.32 -1.0
1,291,916 - SM_b20886 0.32 -0.4
1,291,916 - SM_b20886 0.32 -1.1
1,291,916 - SM_b20886 0.32 -0.2
1,291,916 - SM_b20886 0.32 +0.1
1,291,916 - SM_b20886 0.32 -1.1
1,291,916 - SM_b20886 0.32 -0.4
1,291,916 - SM_b20886 0.32 +0.9
1,291,957 + SM_b20886 0.35 +0.3
1,291,957 + SM_b20886 0.35 +0.9
1,291,958 - SM_b20886 0.35 +0.6
1,291,958 - SM_b20886 0.35 -1.1
1,292,038 + SM_b20886 0.41 -0.2
1,292,039 - SM_b20886 0.41 -1.0

Or see this region's nucleotide sequence