Strain Fitness in Sinorhizobium meliloti 1021 around SMc04056

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04055 and SMc04056 are separated by 105 nucleotidesSMc04056 and SMc04057 are separated by 176 nucleotides SMc04055: SMc04055 - transcriptional regulator, at 3,057,996 to 3,058,952 SMc04055 SMc04056: SMc04056 - oxidoreductase, at 3,059,058 to 3,060,092 SMc04056 SMc04057: SMc04057 - hypothetical protein, at 3,060,269 to 3,062,677 SMc04057 Position (kb) 3059 3060 3061Strain fitness (log2 ratio) -2 -1 0 1 2at 3058.126 kb on + strand, within SMc04055at 3058.288 kb on - strand, within SMc04055at 3058.360 kb on + strand, within SMc04055at 3058.361 kb on - strand, within SMc04055at 3058.361 kb on - strand, within SMc04055at 3058.425 kb on + strand, within SMc04055at 3058.425 kb on + strand, within SMc04055at 3058.425 kb on + strand, within SMc04055at 3058.425 kb on + strand, within SMc04055at 3058.426 kb on - strand, within SMc04055at 3058.426 kb on - strand, within SMc04055at 3058.426 kb on - strand, within SMc04055at 3058.426 kb on - strand, within SMc04055at 3058.426 kb on - strand, within SMc04055at 3058.429 kb on + strand, within SMc04055at 3058.429 kb on + strand, within SMc04055at 3058.430 kb on - strand, within SMc04055at 3058.430 kb on - strand, within SMc04055at 3058.733 kb on + strand, within SMc04055at 3058.733 kb on + strand, within SMc04055at 3058.734 kb on - strand, within SMc04055at 3058.862 kb on - strandat 3058.953 kb on - strandat 3058.992 kb on - strandat 3059.057 kb on + strandat 3059.057 kb on + strandat 3059.057 kb on + strandat 3059.058 kb on - strandat 3059.241 kb on + strand, within SMc04056at 3059.242 kb on - strand, within SMc04056at 3059.418 kb on + strand, within SMc04056at 3059.420 kb on + strand, within SMc04056at 3059.420 kb on + strand, within SMc04056at 3059.420 kb on + strand, within SMc04056at 3059.421 kb on - strand, within SMc04056at 3059.595 kb on + strand, within SMc04056at 3059.595 kb on + strand, within SMc04056at 3059.613 kb on + strand, within SMc04056at 3059.614 kb on - strand, within SMc04056at 3059.614 kb on - strand, within SMc04056at 3059.617 kb on - strand, within SMc04056at 3059.617 kb on - strand, within SMc04056at 3059.637 kb on + strand, within SMc04056at 3059.811 kb on + strand, within SMc04056at 3060.030 kb on + strandat 3060.037 kb on - strandat 3060.037 kb on - strandat 3060.037 kb on - strandat 3060.037 kb on - strandat 3060.045 kb on + strandat 3060.046 kb on - strandat 3060.048 kb on + strandat 3060.048 kb on + strandat 3060.198 kb on + strandat 3060.198 kb on + strandat 3060.198 kb on + strandat 3060.198 kb on + strandat 3060.199 kb on - strandat 3060.199 kb on - strandat 3060.199 kb on - strandat 3060.199 kb on - strandat 3060.199 kb on - strandat 3060.199 kb on - strandat 3060.199 kb on - strandat 3060.497 kb on + strandat 3060.498 kb on - strandat 3060.498 kb on - strandat 3060.498 kb on - strandat 3060.641 kb on + strand, within SMc04057at 3060.641 kb on + strand, within SMc04057at 3060.642 kb on - strand, within SMc04057at 3060.890 kb on + strand, within SMc04057at 3060.890 kb on + strand, within SMc04057at 3061.031 kb on + strand, within SMc04057at 3061.031 kb on + strand, within SMc04057at 3061.031 kb on + strand, within SMc04057at 3061.031 kb on + strand, within SMc04057at 3061.031 kb on + strand, within SMc04057at 3061.032 kb on - strand, within SMc04057at 3061.032 kb on - strand, within SMc04057at 3061.032 kb on - strand, within SMc04057at 3061.032 kb on - strand, within SMc04057at 3061.034 kb on - strand, within SMc04057at 3061.043 kb on + strand, within SMc04057

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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3,058,126 + SMc04055 0.14 +1.5
3,058,288 - SMc04055 0.31 +0.4
3,058,360 + SMc04055 0.38 -0.6
3,058,361 - SMc04055 0.38 -0.2
3,058,361 - SMc04055 0.38 +0.8
3,058,425 + SMc04055 0.45 -0.0
3,058,425 + SMc04055 0.45 -0.8
3,058,425 + SMc04055 0.45 +0.1
3,058,425 + SMc04055 0.45 +2.7
3,058,426 - SMc04055 0.45 -0.1
3,058,426 - SMc04055 0.45 -0.1
3,058,426 - SMc04055 0.45 -0.4
3,058,426 - SMc04055 0.45 +0.1
3,058,426 - SMc04055 0.45 +0.2
3,058,429 + SMc04055 0.45 -0.2
3,058,429 + SMc04055 0.45 -0.6
3,058,430 - SMc04055 0.45 -2.6
3,058,430 - SMc04055 0.45 +0.1
3,058,733 + SMc04055 0.77 +0.1
3,058,733 + SMc04055 0.77 -0.8
3,058,734 - SMc04055 0.77 -0.1
3,058,862 - -0.0
3,058,953 - +0.1
3,058,992 - -0.8
3,059,057 + +0.1
3,059,057 + -0.4
3,059,057 + +0.8
3,059,058 - -0.1
3,059,241 + SMc04056 0.18 -0.1
3,059,242 - SMc04056 0.18 +0.2
3,059,418 + SMc04056 0.35 +0.1
3,059,420 + SMc04056 0.35 -0.2
3,059,420 + SMc04056 0.35 +0.4
3,059,420 + SMc04056 0.35 -0.3
3,059,421 - SMc04056 0.35 +0.3
3,059,595 + SMc04056 0.52 +0.3
3,059,595 + SMc04056 0.52 +0.8
3,059,613 + SMc04056 0.54 -0.1
3,059,614 - SMc04056 0.54 -0.7
3,059,614 - SMc04056 0.54 +0.2
3,059,617 - SMc04056 0.54 +0.1
3,059,617 - SMc04056 0.54 +1.0
3,059,637 + SMc04056 0.56 +0.3
3,059,811 + SMc04056 0.73 +0.1
3,060,030 + -0.2
3,060,037 - +0.3
3,060,037 - +0.1
3,060,037 - -0.4
3,060,037 - +0.6
3,060,045 + -0.4
3,060,046 - -0.4
3,060,048 + -0.0
3,060,048 + -0.7
3,060,198 + -0.7
3,060,198 + -0.0
3,060,198 + +0.0
3,060,198 + -0.5
3,060,199 - +0.3
3,060,199 - -0.2
3,060,199 - +0.3
3,060,199 - -0.4
3,060,199 - -0.2
3,060,199 - +0.3
3,060,199 - -0.8
3,060,497 + -0.4
3,060,498 - +0.9
3,060,498 - -0.3
3,060,498 - +0.5
3,060,641 + SMc04057 0.15 -1.0
3,060,641 + SMc04057 0.15 +0.1
3,060,642 - SMc04057 0.15 -0.8
3,060,890 + SMc04057 0.26 +0.8
3,060,890 + SMc04057 0.26 +0.2
3,061,031 + SMc04057 0.32 +0.2
3,061,031 + SMc04057 0.32 +1.2
3,061,031 + SMc04057 0.32 -0.0
3,061,031 + SMc04057 0.32 +0.3
3,061,031 + SMc04057 0.32 +0.1
3,061,032 - SMc04057 0.32 -0.2
3,061,032 - SMc04057 0.32 -0.2
3,061,032 - SMc04057 0.32 -1.4
3,061,032 - SMc04057 0.32 +1.5
3,061,034 - SMc04057 0.32 -0.3
3,061,043 + SMc04057 0.32 -0.3

Or see this region's nucleotide sequence