Strain Fitness in Sinorhizobium meliloti 1021 around SMa1952

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1951 and SMa1952 are separated by 124 nucleotidesSMa1952 and SMa1953 are separated by 220 nucleotides SMa1951: SMa1951 - hypothetical protein, at 1,107,299 to 1,107,562 SMa1951 SMa1952: SMa1952 - Beta lactamase, at 1,107,687 to 1,108,532 SMa1952 SMa1953: SMa1953 - beta-lactamase, at 1,108,753 to 1,109,757 SMa1953 Position (kb) 1107 1108 1109Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1106.775 kb on + strandat 1106.776 kb on - strandat 1106.776 kb on - strandat 1106.776 kb on - strandat 1106.776 kb on - strandat 1106.781 kb on + strandat 1106.781 kb on + strandat 1106.782 kb on - strandat 1106.837 kb on - strandat 1106.995 kb on + strandat 1106.995 kb on + strandat 1106.995 kb on + strandat 1107.087 kb on + strandat 1107.087 kb on + strandat 1107.210 kb on + strandat 1107.210 kb on + strandat 1107.210 kb on + strandat 1107.211 kb on - strandat 1107.211 kb on - strandat 1107.211 kb on - strandat 1107.230 kb on + strandat 1107.490 kb on + strand, within SMa1951at 1107.490 kb on + strand, within SMa1951at 1107.684 kb on - strandat 1107.770 kb on - strandat 1107.824 kb on + strand, within SMa1952at 1107.887 kb on + strand, within SMa1952at 1107.888 kb on - strand, within SMa1952at 1108.087 kb on - strand, within SMa1952at 1108.158 kb on + strand, within SMa1952at 1108.158 kb on + strand, within SMa1952at 1108.158 kb on + strand, within SMa1952at 1108.159 kb on - strand, within SMa1952at 1108.605 kb on - strandat 1108.645 kb on + strandat 1108.646 kb on - strandat 1108.646 kb on - strandat 1108.646 kb on - strandat 1108.653 kb on + strandat 1108.691 kb on + strandat 1108.691 kb on + strandat 1108.692 kb on - strandat 1108.693 kb on - strandat 1108.754 kb on + strandat 1108.755 kb on - strandat 1108.755 kb on - strandat 1108.755 kb on - strandat 1108.760 kb on + strandat 1108.761 kb on - strandat 1108.761 kb on - strandat 1109.001 kb on + strand, within SMa1953at 1109.120 kb on + strand, within SMa1953at 1109.386 kb on - strand, within SMa1953at 1109.386 kb on - strand, within SMa1953at 1109.418 kb on + strand, within SMa1953at 1109.463 kb on + strand, within SMa1953at 1109.465 kb on + strand, within SMa1953at 1109.466 kb on + strand, within SMa1953at 1109.467 kb on - strand, within SMa1953

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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1,106,775 + +0.3
1,106,776 - +0.0
1,106,776 - -0.3
1,106,776 - -0.1
1,106,776 - -0.5
1,106,781 + -0.6
1,106,781 + +0.5
1,106,782 - -0.4
1,106,837 - -0.0
1,106,995 + -1.9
1,106,995 + -0.1
1,106,995 + +0.1
1,107,087 + +1.2
1,107,087 + +0.3
1,107,210 + +1.1
1,107,210 + -0.0
1,107,210 + +2.1
1,107,211 - -0.1
1,107,211 - -0.4
1,107,211 - +0.0
1,107,230 + +3.1
1,107,490 + SMa1951 0.72 -0.3
1,107,490 + SMa1951 0.72 +0.0
1,107,684 - -0.1
1,107,770 - +0.9
1,107,824 + SMa1952 0.16 -0.0
1,107,887 + SMa1952 0.24 +1.3
1,107,888 - SMa1952 0.24 +0.1
1,108,087 - SMa1952 0.47 +0.5
1,108,158 + SMa1952 0.56 -0.0
1,108,158 + SMa1952 0.56 +0.6
1,108,158 + SMa1952 0.56 +1.1
1,108,159 - SMa1952 0.56 +1.1
1,108,605 - -0.2
1,108,645 + -1.1
1,108,646 - -0.4
1,108,646 - -0.2
1,108,646 - +0.5
1,108,653 + -0.3
1,108,691 + -0.5
1,108,691 + -0.4
1,108,692 - -1.3
1,108,693 - -0.4
1,108,754 + -0.8
1,108,755 - +0.3
1,108,755 - -0.4
1,108,755 - +0.4
1,108,760 + +0.0
1,108,761 - -0.7
1,108,761 - -0.7
1,109,001 + SMa1953 0.25 +0.5
1,109,120 + SMa1953 0.37 +0.6
1,109,386 - SMa1953 0.63 -0.1
1,109,386 - SMa1953 0.63 -0.6
1,109,418 + SMa1953 0.66 -0.4
1,109,463 + SMa1953 0.71 +1.1
1,109,465 + SMa1953 0.71 -0.9
1,109,466 + SMa1953 0.71 -0.0
1,109,467 - SMa1953 0.71 -0.0

Or see this region's nucleotide sequence