Strain Fitness in Sinorhizobium meliloti 1021 around SMc04246

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04245 and SMc04246 are separated by 393 nucleotidesSMc04246 and SMc04247 are separated by 128 nucleotides SMc04245: SMc04245 - high-affinity zinc uptake system ABC transporter protein, at 2,069,425 to 2,070,447 SMc04245 SMc04246: SMc04246 - transmembrane signal peptide protein, at 2,070,841 to 2,071,221 SMc04246 SMc04247: SMc04247 - beta-xylosidase, at 2,071,350 to 2,072,975 SMc04247 Position (kb) 2070 2071 2072Strain fitness (log2 ratio) -2 -1 0 1 2at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2070.029 kb on - strand, within SMc04245at 2070.029 kb on - strand, within SMc04245at 2070.139 kb on + strand, within SMc04245at 2070.140 kb on - strand, within SMc04245at 2070.145 kb on + strand, within SMc04245at 2070.145 kb on + strand, within SMc04245at 2070.146 kb on - strand, within SMc04245at 2070.314 kb on + strand, within SMc04245at 2070.446 kb on - strandat 2070.454 kb on - strandat 2070.529 kb on + strandat 2070.530 kb on - strandat 2070.661 kb on + strandat 2070.662 kb on - strandat 2070.662 kb on - strandat 2070.662 kb on - strandat 2070.742 kb on - strandat 2070.742 kb on - strandat 2070.742 kb on - strandat 2070.745 kb on + strandat 2070.745 kb on + strandat 2070.846 kb on - strandat 2070.951 kb on - strand, within SMc04246at 2070.971 kb on + strand, within SMc04246at 2070.972 kb on - strand, within SMc04246at 2071.255 kb on - strandat 2071.298 kb on + strandat 2071.319 kb on + strandat 2071.627 kb on + strand, within SMc04247at 2071.668 kb on + strand, within SMc04247at 2071.668 kb on + strand, within SMc04247at 2071.668 kb on + strand, within SMc04247at 2071.668 kb on + strand, within SMc04247at 2071.669 kb on - strand, within SMc04247at 2071.669 kb on - strand, within SMc04247at 2071.669 kb on - strand, within SMc04247at 2071.669 kb on - strand, within SMc04247at 2071.674 kb on + strand, within SMc04247at 2071.733 kb on + strand, within SMc04247at 2071.735 kb on + strand, within SMc04247at 2071.735 kb on + strand, within SMc04247at 2071.736 kb on - strand, within SMc04247at 2071.736 kb on - strand, within SMc04247at 2071.736 kb on - strand, within SMc04247at 2071.736 kb on - strand, within SMc04247at 2071.738 kb on + strandat 2071.738 kb on + strand, within SMc04247at 2071.739 kb on - strand, within SMc04247at 2071.739 kb on - strand, within SMc04247at 2071.766 kb on - strand, within SMc04247at 2072.065 kb on + strand, within SMc04247at 2072.165 kb on + strand, within SMc04247at 2072.165 kb on + strand, within SMc04247at 2072.165 kb on + strand, within SMc04247at 2072.166 kb on - strand, within SMc04247at 2072.166 kb on - strand, within SMc04247at 2072.166 kb on - strand, within SMc04247at 2072.166 kb on - strand, within SMc04247at 2072.166 kb on - strand, within SMc04247at 2072.166 kb on - strand, within SMc04247at 2072.170 kb on + strand, within SMc04247at 2072.170 kb on + strand, within SMc04247at 2072.197 kb on + strand, within SMc04247at 2072.198 kb on - strand, within SMc04247at 2072.198 kb on - strand, within SMc04247

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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2,069,940 + SMc04245 0.50 +0.2
2,069,940 + SMc04245 0.50 +0.8
2,069,940 + SMc04245 0.50 -0.2
2,069,940 + SMc04245 0.50 -0.2
2,069,940 + SMc04245 0.50 +0.2
2,069,940 + SMc04245 0.50 +0.0
2,069,940 + SMc04245 0.50 +0.4
2,069,940 + SMc04245 0.50 -1.6
2,069,940 + SMc04245 0.50 -2.2
2,069,940 + SMc04245 0.50 -2.0
2,069,940 + SMc04245 0.50 +0.2
2,069,941 - SMc04245 0.50 -0.5
2,069,941 - SMc04245 0.50 -1.5
2,069,941 - SMc04245 0.50 +0.8
2,069,941 - SMc04245 0.50 +1.8
2,069,941 - SMc04245 0.50 +0.8
2,069,941 - SMc04245 0.50 -1.0
2,070,029 - SMc04245 0.59 -0.2
2,070,029 - SMc04245 0.59 -0.2
2,070,139 + SMc04245 0.70 -1.2
2,070,140 - SMc04245 0.70 +1.8
2,070,145 + SMc04245 0.70 -0.9
2,070,145 + SMc04245 0.70 +0.2
2,070,146 - SMc04245 0.70 -2.0
2,070,314 + SMc04245 0.87 -1.8
2,070,446 - -0.2
2,070,454 - +0.2
2,070,529 + +0.0
2,070,530 - +0.7
2,070,661 + +0.0
2,070,662 - -0.7
2,070,662 - +0.2
2,070,662 - +0.1
2,070,742 - -0.7
2,070,742 - -0.5
2,070,742 - -0.1
2,070,745 + +0.1
2,070,745 + +0.1
2,070,846 - -0.0
2,070,951 - SMc04246 0.29 -1.2
2,070,971 + SMc04246 0.34 -0.5
2,070,972 - SMc04246 0.34 -1.1
2,071,255 - -0.1
2,071,298 + +0.5
2,071,319 + +0.1
2,071,627 + SMc04247 0.17 +0.5
2,071,668 + SMc04247 0.20 +0.5
2,071,668 + SMc04247 0.20 +0.1
2,071,668 + SMc04247 0.20 +0.1
2,071,668 + SMc04247 0.20 -0.1
2,071,669 - SMc04247 0.20 -2.3
2,071,669 - SMc04247 0.20 -1.1
2,071,669 - SMc04247 0.20 +0.3
2,071,669 - SMc04247 0.20 -0.1
2,071,674 + SMc04247 0.20 +0.7
2,071,733 + SMc04247 0.24 +0.1
2,071,735 + SMc04247 0.24 -0.2
2,071,735 + SMc04247 0.24 -0.5
2,071,736 - SMc04247 0.24 -0.5
2,071,736 - SMc04247 0.24 +0.5
2,071,736 - SMc04247 0.24 +0.7
2,071,736 - SMc04247 0.24 +0.6
2,071,738 + -1.0
2,071,738 + SMc04247 0.24 -0.2
2,071,739 - SMc04247 0.24 +1.8
2,071,739 - SMc04247 0.24 +0.1
2,071,766 - SMc04247 0.26 -0.2
2,072,065 + SMc04247 0.44 -0.7
2,072,165 + SMc04247 0.50 +0.6
2,072,165 + SMc04247 0.50 +0.6
2,072,165 + SMc04247 0.50 -0.4
2,072,166 - SMc04247 0.50 +0.3
2,072,166 - SMc04247 0.50 -0.6
2,072,166 - SMc04247 0.50 +0.2
2,072,166 - SMc04247 0.50 -0.5
2,072,166 - SMc04247 0.50 -0.1
2,072,166 - SMc04247 0.50 -0.1
2,072,170 + SMc04247 0.50 +0.2
2,072,170 + SMc04247 0.50 -1.0
2,072,197 + SMc04247 0.52 +1.0
2,072,198 - SMc04247 0.52 +0.3
2,072,198 - SMc04247 0.52 +0.5

Or see this region's nucleotide sequence