Strain Fitness in Sinorhizobium meliloti 1021 around SMc02035

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02034 and SMc02035 are separated by 227 nucleotidesSMc02035 and SMc02036 are separated by 151 nucleotides SMc02034: SMc02034 - oxidoreductase, at 2,740,370 to 2,741,143 SMc02034 SMc02035: SMc02035 - oxidoreductase, at 2,741,371 to 2,742,411 SMc02035 SMc02036: SMc02036 - transcriptional regulator, at 2,742,563 to 2,743,270 SMc02036 Position (kb) 2741 2742 2743Strain fitness (log2 ratio) -1 0 1 2at 2740.372 kb on - strandat 2740.381 kb on + strandat 2740.381 kb on + strandat 2740.381 kb on + strandat 2740.381 kb on + strandat 2740.382 kb on - strandat 2740.382 kb on - strandat 2740.383 kb on + strandat 2740.516 kb on - strand, within SMc02034at 2740.563 kb on + strand, within SMc02034at 2740.563 kb on + strand, within SMc02034at 2740.563 kb on + strand, within SMc02034at 2740.564 kb on - strand, within SMc02034at 2740.564 kb on - strand, within SMc02034at 2740.564 kb on - strand, within SMc02034at 2740.564 kb on - strand, within SMc02034at 2740.564 kb on - strand, within SMc02034at 2740.660 kb on - strand, within SMc02034at 2740.660 kb on - strand, within SMc02034at 2740.744 kb on + strand, within SMc02034at 2740.744 kb on + strand, within SMc02034at 2740.744 kb on + strand, within SMc02034at 2740.745 kb on - strand, within SMc02034at 2740.745 kb on - strand, within SMc02034at 2740.745 kb on - strand, within SMc02034at 2740.745 kb on - strand, within SMc02034at 2740.745 kb on - strand, within SMc02034at 2740.745 kb on - strand, within SMc02034at 2740.745 kb on - strand, within SMc02034at 2740.796 kb on + strand, within SMc02034at 2740.796 kb on + strand, within SMc02034at 2740.797 kb on - strand, within SMc02034at 2740.968 kb on + strand, within SMc02034at 2740.968 kb on + strand, within SMc02034at 2740.969 kb on - strand, within SMc02034at 2740.969 kb on - strand, within SMc02034at 2741.139 kb on + strandat 2741.140 kb on - strandat 2741.143 kb on + strandat 2741.143 kb on + strandat 2741.143 kb on + strandat 2741.143 kb on + strandat 2741.144 kb on - strandat 2741.144 kb on - strandat 2741.144 kb on - strandat 2741.205 kb on - strandat 2741.205 kb on - strandat 2741.313 kb on + strandat 2741.313 kb on + strandat 2741.313 kb on + strandat 2741.695 kb on - strand, within SMc02035at 2741.867 kb on + strand, within SMc02035at 2741.867 kb on + strand, within SMc02035at 2742.037 kb on - strand, within SMc02035at 2742.159 kb on - strand, within SMc02035at 2742.275 kb on + strand, within SMc02035at 2742.424 kb on + strandat 2742.424 kb on + strandat 2742.425 kb on - strandat 2742.425 kb on - strandat 2742.441 kb on + strandat 2742.441 kb on + strandat 2742.441 kb on + strandat 2742.441 kb on + strandat 2742.441 kb on + strandat 2742.441 kb on + strandat 2742.442 kb on - strandat 2742.454 kb on + strandat 2742.455 kb on - strandat 2742.508 kb on + strandat 2742.509 kb on - strandat 2742.509 kb on - strandat 2743.004 kb on + strand, within SMc02036at 2743.020 kb on - strand, within SMc02036at 2743.192 kb on + strand, within SMc02036at 2743.194 kb on - strand, within SMc02036

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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2,740,372 - +0.3
2,740,381 + +0.3
2,740,381 + -0.3
2,740,381 + +0.2
2,740,381 + +0.1
2,740,382 - +0.4
2,740,382 - +0.5
2,740,383 + +0.1
2,740,516 - SMc02034 0.19 -0.2
2,740,563 + SMc02034 0.25 -0.7
2,740,563 + SMc02034 0.25 -0.2
2,740,563 + SMc02034 0.25 -0.2
2,740,564 - SMc02034 0.25 -0.3
2,740,564 - SMc02034 0.25 +0.2
2,740,564 - SMc02034 0.25 +0.5
2,740,564 - SMc02034 0.25 +0.8
2,740,564 - SMc02034 0.25 -0.1
2,740,660 - SMc02034 0.37 -0.7
2,740,660 - SMc02034 0.37 -0.8
2,740,744 + SMc02034 0.48 +0.6
2,740,744 + SMc02034 0.48 +0.6
2,740,744 + SMc02034 0.48 +0.5
2,740,745 - SMc02034 0.48 +0.0
2,740,745 - SMc02034 0.48 -0.3
2,740,745 - SMc02034 0.48 +0.2
2,740,745 - SMc02034 0.48 +0.4
2,740,745 - SMc02034 0.48 +0.1
2,740,745 - SMc02034 0.48 +0.5
2,740,745 - SMc02034 0.48 -0.4
2,740,796 + SMc02034 0.55 -0.2
2,740,796 + SMc02034 0.55 -0.4
2,740,797 - SMc02034 0.55 -0.1
2,740,968 + SMc02034 0.77 +1.2
2,740,968 + SMc02034 0.77 +0.3
2,740,969 - SMc02034 0.77 +0.2
2,740,969 - SMc02034 0.77 +0.9
2,741,139 + +0.3
2,741,140 - +0.8
2,741,143 + +0.2
2,741,143 + +2.3
2,741,143 + +0.3
2,741,143 + +0.3
2,741,144 - -0.2
2,741,144 - +0.4
2,741,144 - +0.7
2,741,205 - +0.1
2,741,205 - -0.1
2,741,313 + -0.1
2,741,313 + -0.3
2,741,313 + -0.0
2,741,695 - SMc02035 0.31 -0.1
2,741,867 + SMc02035 0.48 +0.0
2,741,867 + SMc02035 0.48 +1.9
2,742,037 - SMc02035 0.64 +0.9
2,742,159 - SMc02035 0.76 +0.7
2,742,275 + SMc02035 0.87 -0.9
2,742,424 + -1.1
2,742,424 + -0.3
2,742,425 - +0.4
2,742,425 - +0.3
2,742,441 + +0.2
2,742,441 + +0.1
2,742,441 + -0.3
2,742,441 + +0.5
2,742,441 + -0.8
2,742,441 + -0.1
2,742,442 - -0.2
2,742,454 + +0.3
2,742,455 - +0.6
2,742,508 + +1.2
2,742,509 - +0.1
2,742,509 - +0.3
2,743,004 + SMc02036 0.62 -0.4
2,743,020 - SMc02036 0.65 +0.4
2,743,192 + SMc02036 0.89 +0.6
2,743,194 - SMc02036 0.89 +1.9

Or see this region's nucleotide sequence