Strain Fitness in Sinorhizobium meliloti 1021 around SMa2343

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2341 and SMa2343 are separated by 99 nucleotidesSMa2343 and SMa5012 are separated by 54 nucleotidesSMa5012 and SMa5013 overlap by 4 nucleotides SMa2341: SMa2341 - LysR family transcriptional regulator, at 1,319,298 to 1,320,185 SMa2341 SMa2343: SMa2343 - oxidoreductase, at 1,320,285 to 1,321,007 SMa2343 SMa5012: SMa5012 - hypothetical protein, at 1,321,062 to 1,321,589 SMa5012 SMa5013: SMa5013 - hypothetical protein, at 1,321,586 to 1,321,999 SMa5013 Position (kb) 1320 1321 1322Strain fitness (log2 ratio) -1 0 1 2at 1319.313 kb on + strandat 1319.313 kb on + strandat 1319.313 kb on + strandat 1319.313 kb on + strandat 1319.582 kb on - strand, within SMa2341at 1319.613 kb on + strand, within SMa2341at 1319.613 kb on + strand, within SMa2341at 1319.613 kb on + strand, within SMa2341at 1319.613 kb on + strand, within SMa2341at 1319.614 kb on - strand, within SMa2341at 1319.671 kb on + strand, within SMa2341at 1319.671 kb on + strand, within SMa2341at 1319.671 kb on + strand, within SMa2341at 1319.730 kb on - strand, within SMa2341at 1319.886 kb on - strand, within SMa2341at 1319.886 kb on - strand, within SMa2341at 1320.173 kb on + strandat 1320.173 kb on + strandat 1320.173 kb on + strandat 1320.173 kb on + strandat 1320.173 kb on + strandat 1320.173 kb on + strandat 1320.173 kb on + strandat 1320.173 kb on + strandat 1320.174 kb on - strandat 1320.174 kb on - strandat 1320.174 kb on - strandat 1320.174 kb on - strandat 1320.174 kb on - strandat 1320.174 kb on - strandat 1320.174 kb on - strandat 1320.174 kb on - strandat 1320.176 kb on - strandat 1320.371 kb on - strand, within SMa2343at 1320.578 kb on + strand, within SMa2343at 1320.646 kb on + strand, within SMa2343at 1320.671 kb on + strand, within SMa2343at 1320.734 kb on - strand, within SMa2343at 1320.736 kb on - strand, within SMa2343at 1320.736 kb on - strand, within SMa2343at 1320.791 kb on + strand, within SMa2343at 1320.889 kb on - strand, within SMa2343at 1321.057 kb on - strandat 1321.160 kb on + strand, within SMa5012at 1321.194 kb on - strand, within SMa5012at 1321.194 kb on - strand, within SMa5012at 1321.311 kb on + strand, within SMa5012at 1321.397 kb on + strand, within SMa5012at 1321.398 kb on - strand, within SMa5012at 1321.398 kb on - strand, within SMa5012at 1321.398 kb on - strand, within SMa5012at 1321.398 kb on - strand, within SMa5012at 1321.476 kb on - strand, within SMa5012at 1321.489 kb on + strand, within SMa5012at 1321.490 kb on - strand, within SMa5012at 1321.636 kb on + strand, within SMa5013at 1321.678 kb on + strand, within SMa5013at 1321.710 kb on + strand, within SMa5013at 1321.760 kb on + strand, within SMa5013at 1321.760 kb on + strand, within SMa5013at 1321.790 kb on + strand, within SMa5013at 1321.790 kb on + strand, within SMa5013at 1321.791 kb on - strand, within SMa5013at 1321.791 kb on - strand, within SMa5013at 1321.823 kb on + strand, within SMa5013at 1321.824 kb on - strand, within SMa5013at 1321.825 kb on + strand, within SMa5013at 1321.856 kb on + strand, within SMa5013at 1321.856 kb on + strand, within SMa5013at 1321.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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1,319,313 + -0.3
1,319,313 + +0.0
1,319,313 + +0.0
1,319,313 + +0.5
1,319,582 - SMa2341 0.32 -0.1
1,319,613 + SMa2341 0.35 -0.5
1,319,613 + SMa2341 0.35 +0.7
1,319,613 + SMa2341 0.35 +1.5
1,319,613 + SMa2341 0.35 -0.1
1,319,614 - SMa2341 0.36 +0.3
1,319,671 + SMa2341 0.42 +0.0
1,319,671 + SMa2341 0.42 +0.4
1,319,671 + SMa2341 0.42 +0.0
1,319,730 - SMa2341 0.49 +0.5
1,319,886 - SMa2341 0.66 -0.6
1,319,886 - SMa2341 0.66 -0.3
1,320,173 + +0.9
1,320,173 + -0.1
1,320,173 + +0.9
1,320,173 + +1.0
1,320,173 + -0.1
1,320,173 + +0.4
1,320,173 + -1.0
1,320,173 + +0.1
1,320,174 - +0.0
1,320,174 - +1.1
1,320,174 - +0.3
1,320,174 - -0.5
1,320,174 - +0.2
1,320,174 - -0.5
1,320,174 - +0.5
1,320,174 - -0.1
1,320,176 - +0.4
1,320,371 - SMa2343 0.12 +1.3
1,320,578 + SMa2343 0.41 -0.4
1,320,646 + SMa2343 0.50 -1.5
1,320,671 + SMa2343 0.53 +0.4
1,320,734 - SMa2343 0.62 +0.3
1,320,736 - SMa2343 0.62 -0.1
1,320,736 - SMa2343 0.62 +1.3
1,320,791 + SMa2343 0.70 +0.1
1,320,889 - SMa2343 0.84 +1.7
1,321,057 - +0.1
1,321,160 + SMa5012 0.19 -0.8
1,321,194 - SMa5012 0.25 +0.5
1,321,194 - SMa5012 0.25 -0.1
1,321,311 + SMa5012 0.47 +0.0
1,321,397 + SMa5012 0.63 -0.2
1,321,398 - SMa5012 0.64 +0.0
1,321,398 - SMa5012 0.64 +0.4
1,321,398 - SMa5012 0.64 +1.9
1,321,398 - SMa5012 0.64 -0.7
1,321,476 - SMa5012 0.78 -0.4
1,321,489 + SMa5012 0.81 +0.2
1,321,490 - SMa5012 0.81 -0.8
1,321,636 + SMa5013 0.12 -0.1
1,321,678 + SMa5013 0.22 -0.2
1,321,710 + SMa5013 0.30 -0.4
1,321,760 + SMa5013 0.42 +0.7
1,321,760 + SMa5013 0.42 -0.2
1,321,790 + SMa5013 0.49 -0.0
1,321,790 + SMa5013 0.49 +0.8
1,321,791 - SMa5013 0.50 +0.3
1,321,791 - SMa5013 0.50 -0.1
1,321,823 + SMa5013 0.57 -0.1
1,321,824 - SMa5013 0.57 +0.8
1,321,825 + SMa5013 0.58 -0.3
1,321,856 + SMa5013 0.65 +0.5
1,321,856 + SMa5013 0.65 +0.1
1,321,961 - -1.4

Or see this region's nucleotide sequence