Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2341 and SMa2343 are separated by 99 nucleotides SMa2343 and SMa5012 are separated by 54 nucleotides SMa5012 and SMa5013 overlap by 4 nucleotides
SMa2341: SMa2341 - LysR family transcriptional regulator, at 1,319,298 to 1,320,185
SMa2341
SMa2343: SMa2343 - oxidoreductase, at 1,320,285 to 1,321,007
SMa2343
SMa5012: SMa5012 - hypothetical protein, at 1,321,062 to 1,321,589
SMa5012
SMa5013: SMa5013 - hypothetical protein, at 1,321,586 to 1,321,999
SMa5013
Position (kb)
1320
1321
1322 Strain fitness (log2 ratio)
-1
0
1
2 at 1319.313 kb on + strand at 1319.313 kb on + strand at 1319.313 kb on + strand at 1319.313 kb on + strand at 1319.582 kb on - strand, within SMa2341 at 1319.613 kb on + strand, within SMa2341 at 1319.613 kb on + strand, within SMa2341 at 1319.613 kb on + strand, within SMa2341 at 1319.613 kb on + strand, within SMa2341 at 1319.614 kb on - strand, within SMa2341 at 1319.671 kb on + strand, within SMa2341 at 1319.671 kb on + strand, within SMa2341 at 1319.671 kb on + strand, within SMa2341 at 1319.730 kb on - strand, within SMa2341 at 1319.886 kb on - strand, within SMa2341 at 1319.886 kb on - strand, within SMa2341 at 1320.173 kb on + strand at 1320.173 kb on + strand at 1320.173 kb on + strand at 1320.173 kb on + strand at 1320.173 kb on + strand at 1320.173 kb on + strand at 1320.173 kb on + strand at 1320.173 kb on + strand at 1320.174 kb on - strand at 1320.174 kb on - strand at 1320.174 kb on - strand at 1320.174 kb on - strand at 1320.174 kb on - strand at 1320.174 kb on - strand at 1320.174 kb on - strand at 1320.174 kb on - strand at 1320.176 kb on - strand at 1320.371 kb on - strand, within SMa2343 at 1320.578 kb on + strand, within SMa2343 at 1320.646 kb on + strand, within SMa2343 at 1320.671 kb on + strand, within SMa2343 at 1320.734 kb on - strand, within SMa2343 at 1320.736 kb on - strand, within SMa2343 at 1320.736 kb on - strand, within SMa2343 at 1320.791 kb on + strand, within SMa2343 at 1320.889 kb on - strand, within SMa2343 at 1321.057 kb on - strand at 1321.160 kb on + strand, within SMa5012 at 1321.194 kb on - strand, within SMa5012 at 1321.194 kb on - strand, within SMa5012 at 1321.311 kb on + strand, within SMa5012 at 1321.397 kb on + strand, within SMa5012 at 1321.398 kb on - strand, within SMa5012 at 1321.398 kb on - strand, within SMa5012 at 1321.398 kb on - strand, within SMa5012 at 1321.398 kb on - strand, within SMa5012 at 1321.476 kb on - strand, within SMa5012 at 1321.489 kb on + strand, within SMa5012 at 1321.490 kb on - strand, within SMa5012 at 1321.636 kb on + strand, within SMa5013 at 1321.678 kb on + strand, within SMa5013 at 1321.710 kb on + strand, within SMa5013 at 1321.760 kb on + strand, within SMa5013 at 1321.760 kb on + strand, within SMa5013 at 1321.790 kb on + strand, within SMa5013 at 1321.790 kb on + strand, within SMa5013 at 1321.791 kb on - strand, within SMa5013 at 1321.791 kb on - strand, within SMa5013 at 1321.823 kb on + strand, within SMa5013 at 1321.824 kb on - strand, within SMa5013 at 1321.825 kb on + strand, within SMa5013 at 1321.856 kb on + strand, within SMa5013 at 1321.856 kb on + strand, within SMa5013 at 1321.961 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM remove 1,319,313 + -0.3 1,319,313 + +0.0 1,319,313 + +0.0 1,319,313 + +0.5 1,319,582 - SMa2341 0.32 -0.1 1,319,613 + SMa2341 0.35 -0.5 1,319,613 + SMa2341 0.35 +0.7 1,319,613 + SMa2341 0.35 +1.5 1,319,613 + SMa2341 0.35 -0.1 1,319,614 - SMa2341 0.36 +0.3 1,319,671 + SMa2341 0.42 +0.0 1,319,671 + SMa2341 0.42 +0.4 1,319,671 + SMa2341 0.42 +0.0 1,319,730 - SMa2341 0.49 +0.5 1,319,886 - SMa2341 0.66 -0.6 1,319,886 - SMa2341 0.66 -0.3 1,320,173 + +0.9 1,320,173 + -0.1 1,320,173 + +0.9 1,320,173 + +1.0 1,320,173 + -0.1 1,320,173 + +0.4 1,320,173 + -1.0 1,320,173 + +0.1 1,320,174 - +0.0 1,320,174 - +1.1 1,320,174 - +0.3 1,320,174 - -0.5 1,320,174 - +0.2 1,320,174 - -0.5 1,320,174 - +0.5 1,320,174 - -0.1 1,320,176 - +0.4 1,320,371 - SMa2343 0.12 +1.3 1,320,578 + SMa2343 0.41 -0.4 1,320,646 + SMa2343 0.50 -1.5 1,320,671 + SMa2343 0.53 +0.4 1,320,734 - SMa2343 0.62 +0.3 1,320,736 - SMa2343 0.62 -0.1 1,320,736 - SMa2343 0.62 +1.3 1,320,791 + SMa2343 0.70 +0.1 1,320,889 - SMa2343 0.84 +1.7 1,321,057 - +0.1 1,321,160 + SMa5012 0.19 -0.8 1,321,194 - SMa5012 0.25 +0.5 1,321,194 - SMa5012 0.25 -0.1 1,321,311 + SMa5012 0.47 +0.0 1,321,397 + SMa5012 0.63 -0.2 1,321,398 - SMa5012 0.64 +0.0 1,321,398 - SMa5012 0.64 +0.4 1,321,398 - SMa5012 0.64 +1.9 1,321,398 - SMa5012 0.64 -0.7 1,321,476 - SMa5012 0.78 -0.4 1,321,489 + SMa5012 0.81 +0.2 1,321,490 - SMa5012 0.81 -0.8 1,321,636 + SMa5013 0.12 -0.1 1,321,678 + SMa5013 0.22 -0.2 1,321,710 + SMa5013 0.30 -0.4 1,321,760 + SMa5013 0.42 +0.7 1,321,760 + SMa5013 0.42 -0.2 1,321,790 + SMa5013 0.49 -0.0 1,321,790 + SMa5013 0.49 +0.8 1,321,791 - SMa5013 0.50 +0.3 1,321,791 - SMa5013 0.50 -0.1 1,321,823 + SMa5013 0.57 -0.1 1,321,824 - SMa5013 0.57 +0.8 1,321,825 + SMa5013 0.58 -0.3 1,321,856 + SMa5013 0.65 +0.5 1,321,856 + SMa5013 0.65 +0.1 1,321,961 - -1.4
Or see this region's nucleotide sequence