Strain Fitness in Sinorhizobium meliloti 1021 around SMa1700

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1698 and SMa1700 are separated by 576 nucleotidesSMa1700 and SMa1702 are separated by 146 nucleotides SMa1698: SMa1698 - syrB1 regulator, at 957,928 to 958,383 SMa1698 SMa1700: SMa1700 - hypothetical protein, at 958,960 to 959,169 SMa1700 SMa1702: SMa1702 - hypothetical protein, at 959,316 to 959,909 SMa1702 Position (kb) 958 959 960Strain fitness (log2 ratio) -2 -1 0 1at 958.118 kb on + strand, within SMa1698at 958.132 kb on + strand, within SMa1698at 958.133 kb on - strand, within SMa1698at 958.149 kb on + strand, within SMa1698at 958.365 kb on + strandat 958.368 kb on + strandat 958.400 kb on + strandat 958.401 kb on - strandat 958.556 kb on - strandat 958.583 kb on + strandat 958.583 kb on + strandat 958.583 kb on + strandat 958.680 kb on - strandat 958.695 kb on - strandat 958.697 kb on - strandat 958.719 kb on + strandat 958.720 kb on - strandat 958.795 kb on + strandat 958.795 kb on + strandat 958.796 kb on - strandat 958.796 kb on - strandat 958.876 kb on - strandat 959.113 kb on + strand, within SMa1700at 959.114 kb on - strand, within SMa1700at 959.205 kb on - strandat 959.299 kb on + strandat 959.299 kb on + strandat 959.299 kb on + strandat 959.473 kb on + strand, within SMa1702at 959.474 kb on - strand, within SMa1702at 959.673 kb on + strand, within SMa1702at 959.674 kb on - strand, within SMa1702at 959.801 kb on + strand, within SMa1702at 959.802 kb on - strand, within SMa1702at 960.003 kb on - strandat 960.068 kb on - strandat 960.068 kb on - strandat 960.070 kb on + strandat 960.071 kb on - strandat 960.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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958,118 + SMa1698 0.42 -0.7
958,132 + SMa1698 0.45 +0.3
958,133 - SMa1698 0.45 -0.2
958,149 + SMa1698 0.48 -0.6
958,365 + -0.2
958,368 + -0.4
958,400 + +0.4
958,401 - +0.0
958,556 - +0.6
958,583 + +0.6
958,583 + -0.0
958,583 + -0.6
958,680 - +0.4
958,695 - -0.2
958,697 - +0.2
958,719 + -0.3
958,720 - -0.2
958,795 + +0.6
958,795 + +0.5
958,796 - -0.1
958,796 - +1.3
958,876 - -0.3
959,113 + SMa1700 0.73 -0.1
959,114 - SMa1700 0.73 +1.4
959,205 - -0.7
959,299 + -0.7
959,299 + -0.5
959,299 + +0.3
959,473 + SMa1702 0.26 -0.7
959,474 - SMa1702 0.27 -1.9
959,673 + SMa1702 0.60 -0.7
959,674 - SMa1702 0.60 -0.7
959,801 + SMa1702 0.82 -0.0
959,802 - SMa1702 0.82 +0.5
960,003 - -0.5
960,068 - -1.1
960,068 - -1.7
960,070 + +0.8
960,071 - -0.3
960,157 - -0.8

Or see this region's nucleotide sequence