Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1236 and SMa1239 overlap by 26 nucleotides SMa1239 and SMa1240 overlap by 8 nucleotides SMa1240 and SMa1241 are separated by 7 nucleotides SMa1241 and SMa1243 are separated by 259 nucleotides
SMa1236: SMa1236 - nitrate reductase catalytic subunit, at 677,198 to 679,702
SMa1236
SMa1239: SMa1239 - NapD component of periplasmic nitrate reductase, at 679,677 to 679,964
SMa1239
SMa1240: SMa1240 - NapF ferredoxin component of periplasmic nitrate reductase, at 679,957 to 680,457
SMa1240
SMa1241: SMa1241 - NapE component of periplasmic nitrate reductase, at 680,465 to 680,650
SMa1241
SMa1243: SMa1243 - Azu1 pseudoazurin, at 680,910 to 681,353
SMa1243
Position (kb) 679
680
681 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 679.092 kb on + strand, within SMa1236 at 679.092 kb on + strand, within SMa1236 at 679.093 kb on - strand, within SMa1236 at 679.137 kb on + strand, within SMa1236 at 679.137 kb on + strand, within SMa1236 at 679.138 kb on - strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.417 kb on - strand, within SMa1236 at 679.437 kb on + strand, within SMa1236 at 679.575 kb on - strand at 679.639 kb on + strand at 679.824 kb on + strand, within SMa1239 at 679.825 kb on - strand, within SMa1239 at 679.937 kb on + strand at 679.942 kb on + strand at 679.942 kb on + strand at 679.942 kb on + strand at 680.055 kb on + strand, within SMa1240 at 680.731 kb on - strand at 680.911 kb on + strand at 681.092 kb on + strand at 681.094 kb on + strand, within SMa1243 at 681.094 kb on + strand, within SMa1243 at 681.095 kb on - strand, within SMa1243 at 681.164 kb on + strand, within SMa1243 at 681.164 kb on + strand, within SMa1243 at 681.165 kb on - strand, within SMa1243 at 681.165 kb on - strand, within SMa1243 at 681.406 kb on - strand at 681.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM remove 679,092 + SMa1236 0.76 -0.1 679,092 + SMa1236 0.76 +0.5 679,093 - SMa1236 0.76 -0.1 679,137 + SMa1236 0.77 -0.2 679,137 + SMa1236 0.77 -0.8 679,138 - SMa1236 0.77 -0.5 679,416 + SMa1236 0.89 -1.1 679,416 + SMa1236 0.89 +0.4 679,416 + SMa1236 0.89 +0.2 679,417 - SMa1236 0.89 -0.2 679,437 + SMa1236 0.89 +0.0 679,575 - -0.6 679,639 + -1.3 679,824 + SMa1239 0.51 -2.0 679,825 - SMa1239 0.51 +0.3 679,937 + +0.7 679,942 + +0.4 679,942 + -0.4 679,942 + +0.7 680,055 + SMa1240 0.20 +0.8 680,731 - -0.6 680,911 + -1.2 681,092 + +0.9 681,094 + SMa1243 0.41 +2.9 681,094 + SMa1243 0.41 -0.1 681,095 - SMa1243 0.42 +0.1 681,164 + SMa1243 0.57 +1.1 681,164 + SMa1243 0.57 -1.1 681,165 - SMa1243 0.57 -0.4 681,165 - SMa1243 0.57 +0.7 681,406 - +0.5 681,411 - +0.6
Or see this region's nucleotide sequence