Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21644

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21643 and SM_b21644 are separated by 20 nucleotidesSM_b21644 and SM_b21645 are separated by 11 nucleotides SM_b21643: SM_b21643 - alpha-galactosidase (melibiase) protein, at 1,671,025 to 1,672,398 _b21643 SM_b21644: SM_b21644 - ABC transporter for D-Raffinose, ATPase component (from data), at 1,672,419 to 1,674,089 _b21644 SM_b21645: SM_b21645 - ABC transporter for D-Raffinose, permease component 1 (from data), at 1,674,101 to 1,675,228 _b21645 Position (kb) 1672 1673 1674 1675Strain fitness (log2 ratio) -2 -1 0 1 2at 1671.422 kb on + strand, within SM_b21643at 1671.422 kb on + strand, within SM_b21643at 1671.623 kb on + strand, within SM_b21643at 1671.647 kb on + strand, within SM_b21643at 1671.647 kb on + strand, within SM_b21643at 1671.648 kb on - strand, within SM_b21643at 1671.780 kb on - strand, within SM_b21643at 1671.953 kb on + strand, within SM_b21643at 1671.954 kb on - strand, within SM_b21643at 1671.954 kb on - strand, within SM_b21643at 1671.954 kb on - strandat 1672.093 kb on - strand, within SM_b21643at 1672.324 kb on + strandat 1672.325 kb on - strandat 1672.377 kb on + strandat 1672.403 kb on + strandat 1672.404 kb on - strandat 1672.404 kb on - strandat 1672.416 kb on - strandat 1672.588 kb on + strand, within SM_b21644at 1672.588 kb on + strand, within SM_b21644at 1672.869 kb on + strand, within SM_b21644at 1672.869 kb on + strand, within SM_b21644at 1672.869 kb on + strand, within SM_b21644at 1672.869 kb on + strand, within SM_b21644at 1672.870 kb on - strand, within SM_b21644at 1672.870 kb on - strand, within SM_b21644at 1672.997 kb on - strand, within SM_b21644at 1672.997 kb on - strand, within SM_b21644at 1673.174 kb on + strand, within SM_b21644at 1673.273 kb on + strand, within SM_b21644at 1673.274 kb on - strand, within SM_b21644at 1673.347 kb on + strand, within SM_b21644at 1673.348 kb on - strand, within SM_b21644at 1673.348 kb on - strand, within SM_b21644at 1673.572 kb on + strand, within SM_b21644at 1673.704 kb on + strand, within SM_b21644at 1673.812 kb on + strand, within SM_b21644at 1673.812 kb on + strand, within SM_b21644at 1673.813 kb on - strand, within SM_b21644at 1673.841 kb on - strand, within SM_b21644at 1673.932 kb on + strandat 1673.991 kb on + strandat 1674.198 kb on + strandat 1674.199 kb on - strandat 1674.217 kb on - strand, within SM_b21645at 1674.377 kb on + strand, within SM_b21645at 1674.424 kb on - strand, within SM_b21645at 1674.424 kb on - strand, within SM_b21645at 1674.791 kb on - strand, within SM_b21645at 1674.846 kb on + strand, within SM_b21645at 1674.847 kb on - strand, within SM_b21645at 1674.891 kb on + strand, within SM_b21645at 1674.954 kb on + strand, within SM_b21645at 1674.955 kb on - strand, within SM_b21645

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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1,671,422 + SM_b21643 0.29 +0.8
1,671,422 + SM_b21643 0.29 -0.7
1,671,623 + SM_b21643 0.44 +0.3
1,671,647 + SM_b21643 0.45 +1.8
1,671,647 + SM_b21643 0.45 +1.5
1,671,648 - SM_b21643 0.45 -0.4
1,671,780 - SM_b21643 0.55 +0.0
1,671,953 + SM_b21643 0.68 -0.5
1,671,954 - SM_b21643 0.68 -0.2
1,671,954 - SM_b21643 0.68 +0.9
1,671,954 - +1.4
1,672,093 - SM_b21643 0.78 -0.5
1,672,324 + -0.3
1,672,325 - +0.7
1,672,377 + -0.2
1,672,403 + -0.4
1,672,404 - -1.0
1,672,404 - +0.1
1,672,416 - -0.3
1,672,588 + SM_b21644 0.10 -0.8
1,672,588 + SM_b21644 0.10 -0.3
1,672,869 + SM_b21644 0.27 -0.2
1,672,869 + SM_b21644 0.27 -0.3
1,672,869 + SM_b21644 0.27 +0.1
1,672,869 + SM_b21644 0.27 -0.9
1,672,870 - SM_b21644 0.27 +0.1
1,672,870 - SM_b21644 0.27 +0.7
1,672,997 - SM_b21644 0.35 -0.2
1,672,997 - SM_b21644 0.35 -0.5
1,673,174 + SM_b21644 0.45 -0.9
1,673,273 + SM_b21644 0.51 -0.9
1,673,274 - SM_b21644 0.51 -0.5
1,673,347 + SM_b21644 0.56 -0.3
1,673,348 - SM_b21644 0.56 +0.3
1,673,348 - SM_b21644 0.56 -0.1
1,673,572 + SM_b21644 0.69 -0.8
1,673,704 + SM_b21644 0.77 -0.2
1,673,812 + SM_b21644 0.83 -0.5
1,673,812 + SM_b21644 0.83 -0.6
1,673,813 - SM_b21644 0.83 -0.8
1,673,841 - SM_b21644 0.85 -0.3
1,673,932 + -0.6
1,673,991 + -0.2
1,674,198 + +1.3
1,674,199 - +0.4
1,674,217 - SM_b21645 0.10 +0.8
1,674,377 + SM_b21645 0.24 -0.2
1,674,424 - SM_b21645 0.29 +0.2
1,674,424 - SM_b21645 0.29 +1.2
1,674,791 - SM_b21645 0.61 -2.0
1,674,846 + SM_b21645 0.66 +0.5
1,674,847 - SM_b21645 0.66 +0.6
1,674,891 + SM_b21645 0.70 +1.6
1,674,954 + SM_b21645 0.76 -1.0
1,674,955 - SM_b21645 0.76 +0.1

Or see this region's nucleotide sequence