Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21252

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21251 and SM_b21252 are separated by 77 nucleotidesSM_b21252 and SM_b21253 overlap by 4 nucleotidesSM_b21253 and SM_b21254 overlap by 14 nucleotides SM_b21251: SM_b21251 - hypothetical protein, at 820,286 to 822,502 _b21251 SM_b21252: SM_b21252 - glycosyltransferase, at 822,580 to 823,677 _b21252 SM_b21253: SM_b21253 - hypothetical protein, at 823,674 to 824,444 _b21253 SM_b21254: SM_b21254 - hypothetical protein, at 824,431 to 825,261 _b21254 Position (kb) 822 823 824Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 821.737 kb on + strand, within SM_b21251at 821.738 kb on - strand, within SM_b21251at 821.738 kb on - strand, within SM_b21251at 822.500 kb on + strandat 822.501 kb on - strandat 822.568 kb on - strandat 822.844 kb on + strand, within SM_b21252at 822.844 kb on + strand, within SM_b21252at 822.844 kb on + strand, within SM_b21252at 822.845 kb on - strand, within SM_b21252at 822.847 kb on + strand, within SM_b21252at 822.847 kb on + strand, within SM_b21252at 822.847 kb on + strand, within SM_b21252at 822.848 kb on - strand, within SM_b21252at 822.848 kb on - strand, within SM_b21252at 822.901 kb on + strand, within SM_b21252at 822.901 kb on + strand, within SM_b21252at 822.901 kb on + strand, within SM_b21252at 822.902 kb on - strand, within SM_b21252at 822.902 kb on - strand, within SM_b21252at 822.923 kb on - strand, within SM_b21252at 822.923 kb on - strand, within SM_b21252at 823.158 kb on + strand, within SM_b21252at 823.176 kb on + strand, within SM_b21252at 823.180 kb on + strand, within SM_b21252at 823.180 kb on + strand, within SM_b21252at 823.181 kb on - strand, within SM_b21252at 823.181 kb on - strand, within SM_b21252at 823.181 kb on - strand, within SM_b21252at 823.181 kb on - strand, within SM_b21252at 823.367 kb on - strand, within SM_b21252at 823.394 kb on - strand, within SM_b21252at 823.400 kb on + strand, within SM_b21252at 823.400 kb on + strand, within SM_b21252at 823.400 kb on + strand, within SM_b21252at 823.405 kb on + strand, within SM_b21252at 823.405 kb on + strand, within SM_b21252at 823.405 kb on + strand, within SM_b21252at 823.405 kb on + strand, within SM_b21252at 823.406 kb on - strand, within SM_b21252at 823.406 kb on - strand, within SM_b21252at 823.406 kb on - strand, within SM_b21252at 823.406 kb on - strand, within SM_b21252at 823.406 kb on - strand, within SM_b21252at 823.562 kb on + strand, within SM_b21252at 823.562 kb on + strand, within SM_b21252at 823.563 kb on - strand, within SM_b21252at 823.563 kb on - strand, within SM_b21252at 823.850 kb on - strand, within SM_b21253at 824.040 kb on + strand, within SM_b21253at 824.051 kb on + strand, within SM_b21253at 824.127 kb on - strand, within SM_b21253at 824.253 kb on + strand, within SM_b21253at 824.254 kb on - strand, within SM_b21253at 824.432 kb on + strandat 824.433 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
remove
821,737 + SM_b21251 0.65 +2.4
821,738 - SM_b21251 0.65 +0.3
821,738 - SM_b21251 0.65 -0.5
822,500 + -0.0
822,501 - -1.0
822,568 - -1.3
822,844 + SM_b21252 0.24 -1.9
822,844 + SM_b21252 0.24 -1.6
822,844 + SM_b21252 0.24 -1.6
822,845 - SM_b21252 0.24 -1.5
822,847 + SM_b21252 0.24 -1.8
822,847 + SM_b21252 0.24 -1.6
822,847 + SM_b21252 0.24 -1.9
822,848 - SM_b21252 0.24 -2.5
822,848 - SM_b21252 0.24 -1.5
822,901 + SM_b21252 0.29 -0.8
822,901 + SM_b21252 0.29 +1.8
822,901 + SM_b21252 0.29 -0.7
822,902 - SM_b21252 0.29 -1.8
822,902 - SM_b21252 0.29 -1.1
822,923 - SM_b21252 0.31 -1.6
822,923 - SM_b21252 0.31 -3.1
823,158 + SM_b21252 0.53 -1.6
823,176 + SM_b21252 0.54 -2.6
823,180 + SM_b21252 0.55 -1.8
823,180 + SM_b21252 0.55 -1.5
823,181 - SM_b21252 0.55 -0.2
823,181 - SM_b21252 0.55 -2.5
823,181 - SM_b21252 0.55 -1.9
823,181 - SM_b21252 0.55 -1.1
823,367 - SM_b21252 0.72 -2.0
823,394 - SM_b21252 0.74 -0.8
823,400 + SM_b21252 0.75 -2.5
823,400 + SM_b21252 0.75 -1.1
823,400 + SM_b21252 0.75 -0.5
823,405 + SM_b21252 0.75 -2.3
823,405 + SM_b21252 0.75 +0.0
823,405 + SM_b21252 0.75 -1.2
823,405 + SM_b21252 0.75 -1.9
823,406 - SM_b21252 0.75 -0.7
823,406 - SM_b21252 0.75 -0.9
823,406 - SM_b21252 0.75 -1.7
823,406 - SM_b21252 0.75 -0.2
823,406 - SM_b21252 0.75 +0.8
823,562 + SM_b21252 0.89 -3.1
823,562 + SM_b21252 0.89 -2.0
823,563 - SM_b21252 0.90 -0.3
823,563 - SM_b21252 0.90 -1.8
823,850 - SM_b21253 0.23 -1.5
824,040 + SM_b21253 0.47 -1.5
824,051 + SM_b21253 0.49 -0.8
824,127 - SM_b21253 0.59 -1.8
824,253 + SM_b21253 0.75 -1.6
824,254 - SM_b21253 0.75 +0.8
824,432 + +0.2
824,433 - +0.0

Or see this region's nucleotide sequence