Strain Fitness in Sinorhizobium meliloti 1021 around SMc04244

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04242 and SMc04243 overlap by 1 nucleotidesSMc04243 and SMc04244 overlap by 8 nucleotidesSMc04244 and SMc04245 are separated by 177 nucleotides SMc04242: SMc04242 - zinc uptake regulation protein, at 2,067,157 to 2,067,552 SMc04242 SMc04243: SMc04243 - high-affinity zinc uptake system membrane ABC transporter protein, at 2,067,552 to 2,068,379 SMc04243 SMc04244: SMc04244 - high-affinity zinc uptake system ATP-binding ABC transporter protein, at 2,068,372 to 2,069,247 SMc04244 SMc04245: SMc04245 - high-affinity zinc uptake system ABC transporter protein, at 2,069,425 to 2,070,447 SMc04245 Position (kb) 2068 2069 2070Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2067.473 kb on + strandat 2067.473 kb on + strand, within SMc04242at 2067.474 kb on - strand, within SMc04242at 2067.474 kb on - strand, within SMc04242at 2067.547 kb on - strandat 2067.575 kb on + strandat 2067.650 kb on + strand, within SMc04243at 2067.784 kb on - strand, within SMc04243at 2067.945 kb on + strand, within SMc04243at 2067.945 kb on + strand, within SMc04243at 2067.949 kb on + strand, within SMc04243at 2067.950 kb on - strand, within SMc04243at 2067.950 kb on - strand, within SMc04243at 2067.950 kb on - strand, within SMc04243at 2067.950 kb on - strand, within SMc04243at 2067.950 kb on - strand, within SMc04243at 2068.194 kb on - strand, within SMc04243at 2068.203 kb on + strand, within SMc04243at 2068.204 kb on - strand, within SMc04243at 2068.204 kb on - strand, within SMc04243at 2068.280 kb on - strand, within SMc04243at 2068.400 kb on + strandat 2068.505 kb on + strand, within SMc04244at 2068.574 kb on + strand, within SMc04244at 2068.574 kb on + strand, within SMc04244at 2068.575 kb on - strand, within SMc04244at 2068.575 kb on - strand, within SMc04244at 2068.690 kb on - strand, within SMc04244at 2068.779 kb on - strand, within SMc04244at 2068.779 kb on - strand, within SMc04244at 2068.903 kb on + strand, within SMc04244at 2068.969 kb on - strand, within SMc04244at 2068.969 kb on - strand, within SMc04244at 2069.045 kb on + strand, within SMc04244at 2069.046 kb on - strand, within SMc04244at 2069.046 kb on - strand, within SMc04244at 2069.150 kb on - strand, within SMc04244at 2069.325 kb on - strandat 2069.332 kb on - strandat 2069.384 kb on + strandat 2069.598 kb on + strand, within SMc04245at 2069.598 kb on + strand, within SMc04245at 2069.599 kb on - strand, within SMc04245at 2069.599 kb on - strand, within SMc04245at 2069.602 kb on + strand, within SMc04245at 2069.602 kb on + strand, within SMc04245at 2069.603 kb on - strand, within SMc04245at 2069.603 kb on - strand, within SMc04245at 2069.700 kb on + strand, within SMc04245at 2069.700 kb on + strand, within SMc04245at 2069.700 kb on + strand, within SMc04245at 2069.701 kb on - strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.940 kb on + strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2069.941 kb on - strand, within SMc04245at 2070.029 kb on - strand, within SMc04245at 2070.029 kb on - strand, within SMc04245at 2070.139 kb on + strand, within SMc04245at 2070.140 kb on - strand, within SMc04245at 2070.145 kb on + strand, within SMc04245at 2070.145 kb on + strand, within SMc04245at 2070.146 kb on - strand, within SMc04245

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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2,067,473 + +0.2
2,067,473 + SMc04242 0.80 +0.3
2,067,474 - SMc04242 0.80 +1.4
2,067,474 - SMc04242 0.80 -0.8
2,067,547 - -1.4
2,067,575 + -2.1
2,067,650 + SMc04243 0.12 -2.8
2,067,784 - SMc04243 0.28 +0.8
2,067,945 + SMc04243 0.47 +1.8
2,067,945 + SMc04243 0.47 -1.0
2,067,949 + SMc04243 0.48 +1.8
2,067,950 - SMc04243 0.48 -1.5
2,067,950 - SMc04243 0.48 -0.6
2,067,950 - SMc04243 0.48 +0.2
2,067,950 - SMc04243 0.48 -3.7
2,067,950 - SMc04243 0.48 -0.3
2,068,194 - SMc04243 0.78 -0.0
2,068,203 + SMc04243 0.79 -0.2
2,068,204 - SMc04243 0.79 +0.5
2,068,204 - SMc04243 0.79 -0.4
2,068,280 - SMc04243 0.88 -0.9
2,068,400 + +0.2
2,068,505 + SMc04244 0.15 -0.0
2,068,574 + SMc04244 0.23 -0.5
2,068,574 + SMc04244 0.23 -3.0
2,068,575 - SMc04244 0.23 -0.5
2,068,575 - SMc04244 0.23 +0.2
2,068,690 - SMc04244 0.36 -0.4
2,068,779 - SMc04244 0.46 -0.8
2,068,779 - SMc04244 0.46 -0.5
2,068,903 + SMc04244 0.61 +1.8
2,068,969 - SMc04244 0.68 -2.7
2,068,969 - SMc04244 0.68 -1.7
2,069,045 + SMc04244 0.77 +1.2
2,069,046 - SMc04244 0.77 -0.2
2,069,046 - SMc04244 0.77 -0.2
2,069,150 - SMc04244 0.89 -0.5
2,069,325 - -0.2
2,069,332 - +0.1
2,069,384 + -0.4
2,069,598 + SMc04245 0.17 -0.2
2,069,598 + SMc04245 0.17 -0.8
2,069,599 - SMc04245 0.17 -0.5
2,069,599 - SMc04245 0.17 -0.8
2,069,602 + SMc04245 0.17 -0.2
2,069,602 + SMc04245 0.17 -1.2
2,069,603 - SMc04245 0.17 +0.8
2,069,603 - SMc04245 0.17 -0.8
2,069,700 + SMc04245 0.27 -1.0
2,069,700 + SMc04245 0.27 -2.2
2,069,700 + SMc04245 0.27 -3.0
2,069,701 - SMc04245 0.27 +1.8
2,069,940 + SMc04245 0.50 +0.2
2,069,940 + SMc04245 0.50 +0.8
2,069,940 + SMc04245 0.50 -0.2
2,069,940 + SMc04245 0.50 -0.2
2,069,940 + SMc04245 0.50 +1.2
2,069,940 + SMc04245 0.50 -0.0
2,069,940 + SMc04245 0.50 -0.7
2,069,940 + SMc04245 0.50 -1.7
2,069,940 + SMc04245 0.50 -2.2
2,069,940 + SMc04245 0.50 -1.0
2,069,940 + SMc04245 0.50 +0.2
2,069,941 - SMc04245 0.50 -0.5
2,069,941 - SMc04245 0.50 -1.5
2,069,941 - SMc04245 0.50 +0.8
2,069,941 - SMc04245 0.50 +1.8
2,069,941 - SMc04245 0.50 +0.8
2,069,941 - SMc04245 0.50 -1.0
2,070,029 - SMc04245 0.59 -0.2
2,070,029 - SMc04245 0.59 -0.2
2,070,139 + SMc04245 0.70 -1.2
2,070,140 - SMc04245 0.70 +1.8
2,070,145 + SMc04245 0.70 -1.5
2,070,145 + SMc04245 0.70 +0.2
2,070,146 - SMc04245 0.70 -2.0

Or see this region's nucleotide sequence