Strain Fitness in Sinorhizobium meliloti 1021 around SMc02701

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02700 and SMc02701 overlap by 4 nucleotidesSMc02701 and SMc02702 overlap by 4 nucleotidesSMc02702 and SMc02703 are separated by 298 nucleotides SMc02700: SMc02700 - hypothetical protein, at 2,548,041 to 2,549,300 SMc02700 SMc02701: SMc02701 - hypothetical protein, at 2,549,297 to 2,549,929 SMc02701 SMc02702: SMc02702 - hypothetical protein, at 2,549,926 to 2,550,609 SMc02702 SMc02703: SMc02703 - hypothetical protein, at 2,550,908 to 2,551,921 SMc02703 Position (kb) 2549 2550Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2549.305 kb on - strandat 2549.305 kb on - strandat 2549.367 kb on + strand, within SMc02701at 2549.380 kb on - strand, within SMc02701at 2549.559 kb on + strand, within SMc02701at 2549.560 kb on - strand, within SMc02701at 2549.560 kb on - strand, within SMc02701at 2549.560 kb on - strand, within SMc02701at 2549.805 kb on + strand, within SMc02701at 2549.805 kb on + strand, within SMc02701at 2549.806 kb on - strand, within SMc02701at 2549.810 kb on + strand, within SMc02701at 2549.810 kb on + strand, within SMc02701at 2549.810 kb on + strand, within SMc02701at 2549.811 kb on - strand, within SMc02701at 2550.047 kb on + strand, within SMc02702at 2550.047 kb on + strand, within SMc02702at 2550.047 kb on + strand, within SMc02702at 2550.047 kb on + strand, within SMc02702at 2550.047 kb on + strand, within SMc02702at 2550.048 kb on - strand, within SMc02702at 2550.048 kb on - strand, within SMc02702at 2550.048 kb on - strand, within SMc02702at 2550.048 kb on - strand, within SMc02702at 2550.098 kb on + strand, within SMc02702at 2550.293 kb on + strand, within SMc02702at 2550.294 kb on - strand, within SMc02702at 2550.294 kb on - strand, within SMc02702at 2550.294 kb on - strand, within SMc02702at 2550.294 kb on - strand, within SMc02702at 2550.294 kb on - strand, within SMc02702at 2550.294 kb on - strand, within SMc02702at 2550.374 kb on + strand, within SMc02702at 2550.375 kb on - strand, within SMc02702at 2550.375 kb on - strand, within SMc02702at 2550.375 kb on - strand, within SMc02702at 2550.653 kb on + strandat 2550.654 kb on - strandat 2550.662 kb on + strandat 2550.662 kb on + strandat 2550.685 kb on + strandat 2550.701 kb on - strandat 2550.737 kb on + strandat 2550.796 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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2,549,305 - -0.6
2,549,305 - +0.0
2,549,367 + SMc02701 0.11 -0.3
2,549,380 - SMc02701 0.13 -0.4
2,549,559 + SMc02701 0.41 +0.2
2,549,560 - SMc02701 0.42 -0.4
2,549,560 - SMc02701 0.42 -0.7
2,549,560 - SMc02701 0.42 +0.1
2,549,805 + SMc02701 0.80 -0.0
2,549,805 + SMc02701 0.80 -1.4
2,549,806 - SMc02701 0.80 +0.1
2,549,810 + SMc02701 0.81 -0.6
2,549,810 + SMc02701 0.81 -1.9
2,549,810 + SMc02701 0.81 -0.6
2,549,811 - SMc02701 0.81 -0.9
2,550,047 + SMc02702 0.18 -0.5
2,550,047 + SMc02702 0.18 +2.8
2,550,047 + SMc02702 0.18 +0.3
2,550,047 + SMc02702 0.18 -0.4
2,550,047 + SMc02702 0.18 -0.2
2,550,048 - SMc02702 0.18 +0.0
2,550,048 - SMc02702 0.18 -0.6
2,550,048 - SMc02702 0.18 -0.3
2,550,048 - SMc02702 0.18 +0.8
2,550,098 + SMc02702 0.25 -0.8
2,550,293 + SMc02702 0.54 -0.0
2,550,294 - SMc02702 0.54 +0.4
2,550,294 - SMc02702 0.54 -0.4
2,550,294 - SMc02702 0.54 -0.0
2,550,294 - SMc02702 0.54 +0.3
2,550,294 - SMc02702 0.54 +0.1
2,550,294 - SMc02702 0.54 +0.8
2,550,374 + SMc02702 0.65 -0.3
2,550,375 - SMc02702 0.66 -0.4
2,550,375 - SMc02702 0.66 -0.5
2,550,375 - SMc02702 0.66 +0.1
2,550,653 + +0.7
2,550,654 - +1.1
2,550,662 + +0.4
2,550,662 + +0.5
2,550,685 + -0.1
2,550,701 - -0.1
2,550,737 + +0.4
2,550,796 + -0.1

Or see this region's nucleotide sequence