Strain Fitness in Sinorhizobium meliloti 1021 around SMa5031

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1381 and SMa5031 overlap by 14 nucleotidesSMa5031 and SMa1386 overlap by 4 nucleotides SMa1381: SMa1381 - oxidase, at 761,267 to 762,625 SMa1381 SMa5031: SMa5031 - hypothetical protein, at 762,612 to 762,869 SMa5031 SMa1386: SMa1386 - oxidoreductase, at 762,866 to 763,846 SMa1386 Position (kb) 762 763Strain fitness (log2 ratio) -2 -1 0 1at 761.927 kb on - strand, within SMa1381at 762.308 kb on + strand, within SMa1381at 762.308 kb on + strand, within SMa1381at 762.443 kb on - strand, within SMa1381at 762.443 kb on - strand, within SMa1381at 762.655 kb on + strand, within SMa5031at 762.736 kb on + strand, within SMa5031at 763.064 kb on + strand, within SMa1386at 763.251 kb on + strand, within SMa1386at 763.251 kb on + strand, within SMa1386at 763.296 kb on + strand, within SMa1386at 763.296 kb on + strand, within SMa1386at 763.297 kb on - strand, within SMa1386at 763.400 kb on + strand, within SMa1386at 763.401 kb on - strand, within SMa1386at 763.402 kb on + strand, within SMa1386at 763.403 kb on - strand, within SMa1386at 763.571 kb on + strand, within SMa1386at 763.572 kb on - strand, within SMa1386at 763.572 kb on - strand, within SMa1386at 763.572 kb on - strand, within SMa1386at 763.572 kb on - strand, within SMa1386at 763.578 kb on + strand, within SMa1386at 763.661 kb on - strand, within SMa1386

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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761,927 - SMa1381 0.49 +0.0
762,308 + SMa1381 0.77 +0.2
762,308 + SMa1381 0.77 +0.4
762,443 - SMa1381 0.87 +0.1
762,443 - SMa1381 0.87 -0.2
762,655 + SMa5031 0.17 +0.6
762,736 + SMa5031 0.48 +0.3
763,064 + SMa1386 0.20 +1.5
763,251 + SMa1386 0.39 -0.0
763,251 + SMa1386 0.39 +0.6
763,296 + SMa1386 0.44 +0.4
763,296 + SMa1386 0.44 -0.2
763,297 - SMa1386 0.44 -0.4
763,400 + SMa1386 0.54 -1.9
763,401 - SMa1386 0.55 +0.1
763,402 + SMa1386 0.55 -0.1
763,403 - SMa1386 0.55 -0.1
763,571 + SMa1386 0.72 +0.6
763,572 - SMa1386 0.72 +0.6
763,572 - SMa1386 0.72 +0.7
763,572 - SMa1386 0.72 +0.0
763,572 - SMa1386 0.72 -0.6
763,578 + SMa1386 0.73 +0.2
763,661 - SMa1386 0.81 -0.9

Or see this region's nucleotide sequence