Strain Fitness in Sinorhizobium meliloti 1021 around SMa2315

Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2313 and SMa2315 are separated by 131 nucleotidesSMa2315 and SMa2317 are separated by 9 nucleotidesSMa2317 and SMa2319 are separated by 107 nucleotides SMa2313: SMa2313 - Oxidoreductase, at 1,289,113 to 1,291,146 SMa2313 SMa2315: SMa2315 - hypothetical protein, at 1,291,278 to 1,291,817 SMa2315 SMa2317: SMa2317 - hypothetical protein, at 1,291,827 to 1,292,054 SMa2317 SMa2319: SMa2319 - gst14 glutatione S-transferase, at 1,292,162 to 1,292,809 SMa2319 Position (kb) 1291 1292Strain fitness (log2 ratio) -1 0 1at 1290.302 kb on + strand, within SMa2313at 1290.534 kb on + strand, within SMa2313at 1290.980 kb on + strandat 1290.992 kb on - strandat 1290.992 kb on - strandat 1290.992 kb on - strandat 1291.080 kb on + strandat 1291.265 kb on + strandat 1291.365 kb on + strand, within SMa2315at 1291.559 kb on + strand, within SMa2315at 1291.600 kb on - strand, within SMa2315at 1291.600 kb on - strand, within SMa2315at 1291.652 kb on - strand, within SMa2315at 1291.667 kb on + strand, within SMa2315at 1291.789 kb on + strandat 1291.805 kb on - strandat 1291.805 kb on - strandat 1291.853 kb on + strand, within SMa2317at 1291.853 kb on + strand, within SMa2317at 1291.853 kb on + strand, within SMa2317at 1291.853 kb on + strand, within SMa2317at 1291.960 kb on - strand, within SMa2317at 1291.960 kb on - strand, within SMa2317at 1292.041 kb on + strandat 1292.094 kb on - strandat 1292.149 kb on + strandat 1292.167 kb on + strandat 1292.167 kb on + strandat 1292.167 kb on + strandat 1292.167 kb on + strandat 1292.168 kb on - strandat 1292.168 kb on - strandat 1292.168 kb on - strandat 1292.168 kb on - strandat 1292.168 kb on - strandat 1292.168 kb on - strandat 1292.170 kb on + strandat 1292.170 kb on + strandat 1292.170 kb on + strandat 1292.341 kb on + strand, within SMa2319at 1292.341 kb on + strand, within SMa2319at 1292.345 kb on + strand, within SMa2319at 1292.345 kb on + strand, within SMa2319at 1292.346 kb on - strand, within SMa2319at 1292.540 kb on + strand, within SMa2319at 1292.656 kb on - strand, within SMa2319at 1292.724 kb on - strand, within SMa2319at 1292.724 kb on - strand, within SMa2319at 1292.753 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM
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1,290,302 + SMa2313 0.58 +0.2
1,290,534 + SMa2313 0.70 -0.7
1,290,980 + +0.7
1,290,992 - -1.2
1,290,992 - -0.4
1,290,992 - -0.1
1,291,080 + -0.1
1,291,265 + -0.0
1,291,365 + SMa2315 0.16 +0.9
1,291,559 + SMa2315 0.52 +1.0
1,291,600 - SMa2315 0.60 +0.1
1,291,600 - SMa2315 0.60 -0.6
1,291,652 - SMa2315 0.69 +0.3
1,291,667 + SMa2315 0.72 +0.2
1,291,789 + -0.1
1,291,805 - -0.8
1,291,805 - -0.1
1,291,853 + SMa2317 0.11 +0.1
1,291,853 + SMa2317 0.11 +0.2
1,291,853 + SMa2317 0.11 -0.2
1,291,853 + SMa2317 0.11 +0.6
1,291,960 - SMa2317 0.58 +0.6
1,291,960 - SMa2317 0.58 +0.2
1,292,041 + -0.1
1,292,094 - -0.5
1,292,149 + +0.7
1,292,167 + -1.6
1,292,167 + -0.9
1,292,167 + +0.5
1,292,167 + +0.2
1,292,168 - -0.2
1,292,168 - +0.2
1,292,168 - -0.8
1,292,168 - -0.1
1,292,168 - -0.6
1,292,168 - -0.9
1,292,170 + -0.5
1,292,170 + -1.2
1,292,170 + +1.4
1,292,341 + SMa2319 0.28 -0.2
1,292,341 + SMa2319 0.28 -0.1
1,292,345 + SMa2319 0.28 +0.0
1,292,345 + SMa2319 0.28 -1.4
1,292,346 - SMa2319 0.28 +0.1
1,292,540 + SMa2319 0.58 +0.4
1,292,656 - SMa2319 0.76 +0.1
1,292,724 - SMa2319 0.87 -0.0
1,292,724 - SMa2319 0.87 -0.1
1,292,753 + -0.1

Or see this region's nucleotide sequence