Experiment: 6-Pentyl-2H-pyran-2-one 0.385649 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1957 and SMa1959 are separated by 304 nucleotides SMa1959 and SMa1960 are separated by 92 nucleotides SMa1960 and SMa1961 are separated by 65 nucleotides
SMa1957: SMa1957 - hypothetical protein, at 1,112,318 to 1,113,208
SMa1957
SMa1959: SMa1959 - hypothetical protein, at 1,113,513 to 1,114,751
SMa1959
SMa1960: SMa1960 - hypothetical protein, at 1,114,844 to 1,115,299
SMa1960
SMa1961: SMa1961 - polyhydroxybutyrate depolymerase, at 1,115,365 to 1,116,459
SMa1961
Position (kb)
1113
1114
1115 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1112.555 kb on + strand, within SMa1957 at 1112.725 kb on + strand, within SMa1957 at 1112.725 kb on + strand, within SMa1957 at 1112.725 kb on + strand, within SMa1957 at 1112.726 kb on - strand, within SMa1957 at 1112.769 kb on + strand, within SMa1957 at 1112.769 kb on + strand, within SMa1957 at 1112.770 kb on - strand, within SMa1957 at 1112.770 kb on - strand, within SMa1957 at 1112.853 kb on + strand, within SMa1957 at 1112.854 kb on - strand, within SMa1957 at 1113.074 kb on + strand, within SMa1957 at 1113.075 kb on - strand, within SMa1957 at 1113.075 kb on - strand, within SMa1957 at 1113.075 kb on - strand, within SMa1957 at 1113.191 kb on - strand at 1113.191 kb on - strand at 1113.191 kb on - strand at 1113.226 kb on - strand at 1113.295 kb on + strand at 1113.331 kb on + strand at 1113.332 kb on - strand at 1113.332 kb on - strand at 1113.337 kb on - strand at 1113.337 kb on - strand at 1113.375 kb on + strand at 1113.462 kb on + strand at 1113.462 kb on + strand at 1113.463 kb on - strand at 1113.464 kb on + strand at 1113.465 kb on - strand at 1113.466 kb on + strand at 1113.467 kb on - strand at 1113.467 kb on - strand at 1113.467 kb on - strand at 1113.467 kb on - strand at 1113.467 kb on - strand at 1113.503 kb on + strand at 1113.511 kb on - strand at 1113.511 kb on - strand at 1113.588 kb on + strand at 1113.588 kb on + strand at 1113.589 kb on - strand at 1113.613 kb on + strand at 1113.613 kb on + strand at 1113.613 kb on + strand at 1113.614 kb on - strand at 1113.614 kb on - strand at 1113.614 kb on - strand at 1113.630 kb on - strand at 1113.658 kb on + strand, within SMa1959 at 1113.659 kb on - strand, within SMa1959 at 1113.663 kb on + strand, within SMa1959 at 1113.664 kb on - strand, within SMa1959 at 1113.668 kb on + strand, within SMa1959 at 1113.670 kb on + strand, within SMa1959 at 1113.671 kb on - strand, within SMa1959 at 1113.713 kb on - strand, within SMa1959 at 1113.964 kb on + strand, within SMa1959 at 1113.964 kb on + strand, within SMa1959 at 1114.195 kb on + strand, within SMa1959 at 1114.350 kb on - strand, within SMa1959 at 1114.440 kb on + strand, within SMa1959 at 1114.613 kb on - strand, within SMa1959 at 1114.660 kb on - strand at 1114.671 kb on + strand at 1114.703 kb on + strand at 1114.743 kb on + strand at 1114.874 kb on + strand at 1115.084 kb on + strand, within SMa1960 at 1115.084 kb on + strand, within SMa1960 at 1115.084 kb on + strand, within SMa1960 at 1115.085 kb on - strand, within SMa1960 at 1115.214 kb on + strand, within SMa1960 at 1115.215 kb on - strand, within SMa1960 at 1115.270 kb on - strand at 1115.292 kb on + strand at 1115.311 kb on - strand at 1115.374 kb on + strand at 1115.374 kb on + strand at 1115.474 kb on - strand at 1115.474 kb on - strand at 1115.515 kb on - strand, within SMa1961 at 1115.568 kb on + strand, within SMa1961 at 1115.569 kb on - strand, within SMa1961 at 1115.569 kb on - strand, within SMa1961 at 1115.570 kb on + strand, within SMa1961 at 1115.570 kb on + strand, within SMa1961 at 1115.570 kb on + strand, within SMa1961 at 1115.570 kb on + strand, within SMa1961 at 1115.570 kb on + strand, within SMa1961 at 1115.571 kb on - strand, within SMa1961 at 1115.571 kb on - strand, within SMa1961 at 1115.571 kb on - strand, within SMa1961 at 1115.571 kb on - strand, within SMa1961 at 1115.626 kb on - strand, within SMa1961
Per-strain Table
Position Strand Gene LocusTag Fraction 6-Pentyl-2H-pyran-2-one 0.385649 mM remove 1,112,555 + SMa1957 0.27 +0.7 1,112,725 + SMa1957 0.46 -0.2 1,112,725 + SMa1957 0.46 -0.5 1,112,725 + SMa1957 0.46 +0.3 1,112,726 - SMa1957 0.46 +0.1 1,112,769 + SMa1957 0.51 -0.1 1,112,769 + SMa1957 0.51 -0.2 1,112,770 - SMa1957 0.51 -0.9 1,112,770 - SMa1957 0.51 -0.4 1,112,853 + SMa1957 0.60 -0.5 1,112,854 - SMa1957 0.60 +0.6 1,113,074 + SMa1957 0.85 -0.2 1,113,075 - SMa1957 0.85 -0.1 1,113,075 - SMa1957 0.85 +0.1 1,113,075 - SMa1957 0.85 +0.4 1,113,191 - -0.5 1,113,191 - -0.1 1,113,191 - -0.7 1,113,226 - +0.6 1,113,295 + -0.6 1,113,331 + +0.0 1,113,332 - -0.3 1,113,332 - -0.9 1,113,337 - +0.3 1,113,337 - +0.8 1,113,375 + -0.2 1,113,462 + -0.5 1,113,462 + +0.3 1,113,463 - +0.5 1,113,464 + -1.9 1,113,465 - +0.1 1,113,466 + +0.7 1,113,467 - -0.3 1,113,467 - -0.2 1,113,467 - +0.3 1,113,467 - -0.0 1,113,467 - -0.0 1,113,503 + -0.4 1,113,511 - -0.5 1,113,511 - +0.2 1,113,588 + -1.3 1,113,588 + +0.0 1,113,589 - +1.2 1,113,613 + +0.1 1,113,613 + +0.3 1,113,613 + +0.9 1,113,614 - -1.2 1,113,614 - -0.2 1,113,614 - +0.3 1,113,630 - -0.0 1,113,658 + SMa1959 0.12 +1.4 1,113,659 - SMa1959 0.12 +0.1 1,113,663 + SMa1959 0.12 +1.1 1,113,664 - SMa1959 0.12 -0.3 1,113,668 + SMa1959 0.13 -0.5 1,113,670 + SMa1959 0.13 +1.2 1,113,671 - SMa1959 0.13 +1.8 1,113,713 - SMa1959 0.16 +0.2 1,113,964 + SMa1959 0.36 -0.4 1,113,964 + SMa1959 0.36 +0.2 1,114,195 + SMa1959 0.55 +0.8 1,114,350 - SMa1959 0.68 -0.2 1,114,440 + SMa1959 0.75 +0.4 1,114,613 - SMa1959 0.89 -0.2 1,114,660 - +0.5 1,114,671 + -0.0 1,114,703 + +0.7 1,114,743 + +0.0 1,114,874 + -0.3 1,115,084 + SMa1960 0.53 -0.7 1,115,084 + SMa1960 0.53 -0.7 1,115,084 + SMa1960 0.53 +0.1 1,115,085 - SMa1960 0.53 +0.3 1,115,214 + SMa1960 0.81 +1.0 1,115,215 - SMa1960 0.81 +0.1 1,115,270 - -1.2 1,115,292 + +0.2 1,115,311 - -0.7 1,115,374 + -0.1 1,115,374 + +0.1 1,115,474 - -0.1 1,115,474 - -0.2 1,115,515 - SMa1961 0.14 -0.4 1,115,568 + SMa1961 0.19 -0.7 1,115,569 - SMa1961 0.19 -0.2 1,115,569 - SMa1961 0.19 +1.8 1,115,570 + SMa1961 0.19 +1.2 1,115,570 + SMa1961 0.19 +0.2 1,115,570 + SMa1961 0.19 -0.3 1,115,570 + SMa1961 0.19 +0.0 1,115,570 + SMa1961 0.19 -0.6 1,115,571 - SMa1961 0.19 -0.0 1,115,571 - SMa1961 0.19 +0.8 1,115,571 - SMa1961 0.19 -0.0 1,115,571 - SMa1961 0.19 +0.1 1,115,626 - SMa1961 0.24 -0.3
Or see this region's nucleotide sequence